Computing: Difference between revisions
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*[http://pixie.princeton.edu/pixie/documents.php bioPIXIE] is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate | *[http://pixie.princeton.edu/pixie/documents.php bioPIXIE] is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate | ||
*[http://perlprimer.sourceforge.net/ PerlPrimer] - open-source PCR primer design (Windows and Linux) | *[http://perlprimer.sourceforge.net/ PerlPrimer] - open-source PCR primer design (Windows and Linux) | ||
*[http://www.bioperl.org/ BioPerl] project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research | |||
*[http://biojava.org/ BioJava] is an open-source project dedicated to providing a Java framework for processing biological data | *[http://biojava.org/ BioJava] is an open-source project dedicated to providing a Java framework for processing biological data | ||
*[http://biopython.org/ BioPython] is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics | |||
==MIT== | ==MIT== | ||
Revision as of 15:35, 20 November 2006
General
- Gnome - free software desktop project - usage tips
- PPT to PDF on a Mac
- Process Control
- Software for papers, posters and talks
- VectorNTI
- Perl
- Python
- Ruby
- Emacs
- CGI - Common Gateway Interface
- Cluster
- Subversion (SVN) version control system
- OpenPBS
- Eclipse
- Firefox
- MySQL
- CSS - Cascading Style Sheets
- SSH - Secure Shell
- DiceWare offers a better way to create a strong, yet easy to remember passphrase for use with encryption and security programs
- Code2HTML converts a program source code to syntax highlighted HTML
- PHP
- Regular Expressions - tutorial and examples in various languages (a.k.a. regexp.info)
- ILoveJackDaniel's - web design and development reference
- Google Code Search helps you find function definitions and sample code by giving you one place to search publicly accessible source code hosted on the Internet
- gotAPI.com - the most comprehensive API collection on the web
- Software Carpentry - this course is an intensive introduction to basic software development practices for scientists and engineers that can reduce the time they spend programming by 20-25%.
Scientific
- In silico protocols on OWW
- Graphing high dimensional data
- MATLAB
- R for Statistical Computing
- The Really Easy Statistics Site
- Modeller
- Microfootprinter
- Genamics SoftwareSeek links to biotechnology software
- LIMS - Laboratory Information Management Systems
- bioPIXIE is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate
- PerlPrimer - open-source PCR primer design (Windows and Linux)
- BioPerl project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research
- BioJava is an open-source project dedicated to providing a Java framework for processing biological data
- BioPython is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics
MIT
- Athena - AFS lockers, Kerberos tickets, user accounts
- BioMicro Center - DNA-NET accounts and file storage
- BioMicro Cluster
