Computational Biology/Gene Expression modeling/Stochastic Approach: Difference between revisions
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| Line 18: | Line 18: | ||
! style="background:#efefef" | Reference | ! style="background:#efefef" | Reference | ||
|- | |- | ||
| | | Transcription initiation | ||
| [0.0025 - 0.2] | | [0.0025 - 0.2] | ||
| s-1 | | s-1 | ||
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! style="background:#efefef" | Part / Organism | ! style="background:#efefef" | Part / Organism | ||
! style="background:#efefef" | Experimental validation | ! style="background:#efefef" | Experimental validation | ||
! style="background:#efefef" | Author | ! style="background:#efefef" | Author / Year | ||
! style="background:#efefef" | Reference | ! style="background:#efefef" | Reference | ||
|- | |||
| mRNA half-life | |||
| 2 | |||
| min | |||
| generic | |||
| no | |||
| Thattai et al, 2001 | |||
| [http://www.pnas.org/cgi/content/abstract/98/15/8614 article] | |||
|- | |- | ||
|next event | |next event | ||
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! style="background:#efefef" | Part / Organism | ! style="background:#efefef" | Part / Organism | ||
! style="background:#efefef" | Experimental validation | ! style="background:#efefef" | Experimental validation | ||
! style="background:#efefef" | Author | ! style="background:#efefef" | Author / Year | ||
! style="background:#efefef" | Reference | ! style="background:#efefef" | Reference | ||
|- | |||
| Translation initiation | |||
| [0.028-0.231] | |||
| | |||
| generic | |||
| no | |||
| Thattai et al, 2001 | |||
| [http://www.pnas.org/cgi/content/abstract/98/15/8614 article] | |||
|- | |- | ||
|next event | |next event | ||
| Line 86: | Line 102: | ||
! style="background:#efefef" | Part / Organism | ! style="background:#efefef" | Part / Organism | ||
! style="background:#efefef" | Experimental validation | ! style="background:#efefef" | Experimental validation | ||
! style="background:#efefef" | Author | ! style="background:#efefef" | Author / Year | ||
! style="background:#efefef" | Reference | ! style="background:#efefef" | Reference | ||
|- | |||
| Protein half-life | |||
| [15-120] | |||
| min | |||
| generic | |||
| no | |||
| Thattai et al, 2001 | |||
| [http://www.pnas.org/cgi/content/abstract/98/15/8614 article] | |||
|- | |- | ||
|next event | |next event | ||
Revision as of 07:32, 15 March 2007
Modeling resources dealing with Stochastic Gene Expression
Models described in literature
Parameters used in literature
| Event modeled | Value / Range | Unit | Part / Organism | Experimental validation | Author / Year | Reference |
|---|---|---|---|---|---|---|
| Transcription initiation | [0.0025 - 0.2] | s-1 | generic | no | Thattai et al, 2001 | article |
| next event | [0.01 - 0.1] | s-1 | not defined | no | Dr Doc | link |
mRNA degradation
| Event modeled | Value / Range | Unit | Part / Organism | Experimental validation | Author / Year | Reference |
|---|---|---|---|---|---|---|
| mRNA half-life | 2 | min | generic | no | Thattai et al, 2001 | article |
| next event | 0.01 - 0.1 | s-1 | not defined | no | Dr Doc | link |
| Event modeled | Value / Range | Unit | Part / Organism | Experimental validation | Author / Year | Reference |
|---|---|---|---|---|---|---|
| Translation initiation | [0.028-0.231] | generic | no | Thattai et al, 2001 | article | |
| next event | 0.01 - 0.1 | s-1 | not defined | no | Dr Doc | link |
Protein degradation
| Event modeled | Value / Range | Unit | Part / Organism | Experimental validation | Author / Year | Reference |
|---|---|---|---|---|---|---|
| Protein half-life | [15-120] | min | generic | no | Thattai et al, 2001 | article |
| next event | 0.01 - 0.1 | s-1 | not defined | no | Dr Doc | link |
