ChemEng575Docs

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__NOTOC__
__NOTOC__
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== Week 1 ==
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== Schedule for Semester ==
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'''Reading'''<br>
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Updated 1-26-15<br>
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Tissue Engineering Chapters 1-4<br>
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[[Image:575_Schedule_2015.jpg | 750px]]<br>
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External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
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External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
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'''Lecture Slides'''<br>
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== Lecture Slides ==
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[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
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[[Media:575_Lecture_1.pptx |Lecture 1 Slides]]<br>
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[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
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[[Media:575_Lecture_2.pptx |Lecture 2 Slides]]<br>
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[[Media:575_Lecture_3.pptx |Lecture 3 Slides]]<br>
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[[Media:575_Lecture_4.pptx |Lecture 4 Slides]]<br>
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[[Media:575_Lecture_5.pptx |Lecture 5 Slides]]<br>
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[[Media:575_Lecture_6.pptx |Lecture 6 Slides]]<br>
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[[Media:575_Lecture_7.pptx |Lecture 7 Slides]]<br>
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[[Media:575_Lecture_8.pptx |Lecture 8 Slides]]<br>
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Lecture 9: no new slides (wikis took up entire lecture time)<br>
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[[Media:575_Lecture_10.pptx |Lecture 10 Slides]]<br>
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[[Media:575_Lecture_11.pptx |Lecture 11 Slides]]<br>
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[[Media:575_Lecture_12.pptx |Lecture 12 Slides]]<br>
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[[Media:575_Lecture_13.pptx |Lecture 13 Slides]]<br>
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Lecture 14: no new slides (grant review day)<br>
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[[Media:575_Lecture_15.pptx |Lecture 15 Slides]]<br>
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[[Media:575_Pres_Tips.pptx |Presentation Tips Discussed Together]]<br>
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[[Media:575_Lecture_17.pptx |Lecture 17 Slides]]<br>
 +
Lecture 18: no new slides (worked on specific aims pages)<br>
 +
[[Media:575_Lecture_19.pptx |Lecture 19 Slides]]<br>
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[[Media:575_Lecture_20.pptx |Lecture 20 Slides]]<br>
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== Week 2 ==
 
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'''Reading'''<br>
 
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'''STEM CELLS'''<br>
 
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External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
 
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'''HSCs'''<br>
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== Readings ==
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External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
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'''Lecture 1''' 1/20/15<br>
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External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
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None
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'''MSCs'''<br>
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'''Lecture 2''' 1/22/15<br>
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External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
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None<br>
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External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
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Need help with biology?  Check out MBOC (Alberts) from the library, Great resource.<br>
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'''Lecture Slides'''<br>
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'''Lecture 3''' 1/29/15<br>
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[[Media:590B_Lecture_3.pdf | Lecture 3 Slides]]<br>
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Chapter 2 of the wiki book [[575 Wikis]]
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[[Media:590B_Lecture_4.pptx | Lecture 4 Slides]]<br>
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== Week 3 ==
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'''Lecture 4''' 2/3/15<br>
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'''Reading'''<br>
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Paper Review [[Media:Langer1993.pdf | 1993 Intro to Tissue Engineering]]<br>
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Tissue Engineering Chapters 3 & 6<br>
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'''ESCs'''<br>
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'''Lecture 5''' 2/10/15<br>
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External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
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Paper Review [[Media:iPSC_Breakthrough.pdf | The iPSC Breakthrough Paper]]<br>
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External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
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External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
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'''iPSCs'''<br>
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'''Lecture 6''' 2/12/15<br>
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External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
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Chapter 3 of the wiki book [[575 Wikis]]
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'''CELL ADHESION'''<br>
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'''Lecture 7''' 2/19/15<br>
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External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
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Chapter 4 of the wiki book [[575 Wikis]]
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External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
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External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
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[[Media:590B_Lecture_5.pptx | Lecture 5 Slides]]<br>
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'''Lecture 8''' 2/24/15<br>
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[[Media:590B_Lecture_6.pptx | Lecture 6 Slides]]<br>
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Paper Review [[Media:McBeath_CellShape.pdf | Cell Shape and Stem Cells]]<br>
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== Week 4 ==
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'''Lecture 9''' 2/26/15 <br>
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'''Reading'''<br>
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Chapter 4 of the wiki book [[575 Wikis]]
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Tissue Engineering Chapter 12<br>
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'''Lecture Slides'''<br>
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'''Lecture 10''' 3/10/15 <br>
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[[Media:590B_Lecture_7.pptx | Lecture 7 Slides]]<br>
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Paper Review [[Media:Mechanics_StemCells_Review.pdf | Mechanical Regulation of Stem Cells]]<br>
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''anything below here hasn't been updated for 2013 yet''
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'''Lecture 11''' 3/12/15 <br>
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***
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[http://grants.nih.gov/grants/grants_process.htm NIH grants guide]
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== Week 8 ==
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'''Lecture 12'''<br>
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Lecture 12, 3/13: <br>
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Paper Review [[Media:FOXN1_Thymus.pdf | Engineered Thymus]]<br>
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Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
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Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
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== Week 7 ==
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'''Lecture 13'''<br>
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Lecture 11, 3/8: <br>
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Paper Review [[Media:3D_Injectable_Microniches.pdf | Ischemia and Gels]]<br>
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See your lecture slides!
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== Week 6 ==
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'''Lecture 14'''<br>
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Lecture 8, 2/28: <br>
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Grant review day. See your assigned grants at [[ChemEng590BAssignments]]
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Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
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Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
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biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
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microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
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Lecture 9, 3/1: <br>
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'''Lecture 15'''<br>
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first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
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Paper Review [[Media:Migration_and_Cytoskeleton.pdf | Review of Cell Cytoskeleton]]<br>
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gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
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biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
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3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
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3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
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3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
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== Week 5 ==
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'''Lecture 16'''<br>
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External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
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Chapter 7 of the wiki book [[575 Wikis]]
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External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
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External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
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'''Lecture 17'''<br>
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External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
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Paper Review [[Media:Epithelial_Wound_Healing.pdf | Epithelial Cells and Forces]]<br>
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'''Lecture 18'''<br>
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Chapter 7 of the wiki book [[575 Wikis]]
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'''Lecture 19'''<br>
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Paper Review [[Media:PLoS_Origami.pdf | Cell Origami]]<br>
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'''Lecture 20'''<br>
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Paper Review [[Media:Brangwynne_droplets.pdf | Germline Droplets]]<br>

Current revision

      Home                 Documents               Assignments               Wiki Schedule                 Wiki Pages                 Course Syllabus


Schedule for Semester

Updated 1-26-15

Lecture Slides

Lecture 1 Slides
Lecture 2 Slides
Lecture 3 Slides
Lecture 4 Slides
Lecture 5 Slides
Lecture 6 Slides
Lecture 7 Slides
Lecture 8 Slides
Lecture 9: no new slides (wikis took up entire lecture time)
Lecture 10 Slides
Lecture 11 Slides
Lecture 12 Slides
Lecture 13 Slides
Lecture 14: no new slides (grant review day)
Lecture 15 Slides
Presentation Tips Discussed Together
Lecture 17 Slides
Lecture 18: no new slides (worked on specific aims pages)
Lecture 19 Slides
Lecture 20 Slides


Readings

Lecture 1 1/20/15
None

Lecture 2 1/22/15
None
Need help with biology? Check out MBOC (Alberts) from the library, Great resource.

Lecture 3 1/29/15
Chapter 2 of the wiki book 575 Wikis

Lecture 4 2/3/15
Paper Review 1993 Intro to Tissue Engineering

Lecture 5 2/10/15
Paper Review The iPSC Breakthrough Paper

Lecture 6 2/12/15
Chapter 3 of the wiki book 575 Wikis

Lecture 7 2/19/15
Chapter 4 of the wiki book 575 Wikis

Lecture 8 2/24/15
Paper Review Cell Shape and Stem Cells

Lecture 9 2/26/15
Chapter 4 of the wiki book 575 Wikis

Lecture 10 3/10/15
Paper Review Mechanical Regulation of Stem Cells

Lecture 11 3/12/15
NIH grants guide

Lecture 12
Paper Review Engineered Thymus

Lecture 13
Paper Review Ischemia and Gels

Lecture 14
Grant review day. See your assigned grants at ChemEng590BAssignments

Lecture 15
Paper Review Review of Cell Cytoskeleton

Lecture 16
Chapter 7 of the wiki book 575 Wikis

Lecture 17
Paper Review Epithelial Cells and Forces

Lecture 18
Chapter 7 of the wiki book 575 Wikis

Lecture 19
Paper Review Cell Origami

Lecture 20

Paper Review Germline Droplets
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