ChemEng575Docs

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__NOTOC__
__NOTOC__
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== Week 1 ==
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== Schedule for Semester ==
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'''Reading'''<br>
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Updated 1-8-16<br>
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Tissue Engineering Chapters 1-4<br>
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[[Image:575_Schedule_2016.jpg | 750px]]<br>
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External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
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External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
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'''Lecture Slides'''<br>
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== Lecture Slides and Assigned Reading == 
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[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
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[[Media:575_Lecture_1.pptx |Lecture 1 (1/21/16) Slides]] Reading: Chapter 1 of the wiki book [[575 Wikis]] <br>
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[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
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[[Media:575_Lecture_2.pptx |Lecture 2 (1/28/16) Slides]] Reading: Chapter 2 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_3.pptx |Lecture 3 (2/2/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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[[Media:575_Lecture_4.pptx |Lecture 4 (2/4/16) Slides]] Reading: Chapter 3 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_5.pptx |Lecture 5 (2/9/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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[[Media:575_Lecture_6.pptx |Lecture 6 (2/18/16) Slides]] Reading: Chapter 4 of the wiki book [[575 Wikis]] <br>
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Lecture 7 (2/23/16) No Slides. Reading: Chapter 4 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_8.pptx |Lecture 8 (2/25/16) Slides]] Reading: Chapter 7 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_9.pptx |Lecture 9 (3/1/16) Slides]] Reading: Chapter 8 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_10.pptx |Lecture 10 (3/3/16) Slides]] Reading: Chapter 8 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_11.pptx |Lecture 11 (3/8/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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[[Media:575_Lecture_12.pptx |Lecture 12 (3/10/16) Slides]] Reading: [http://grants.nih.gov/grants/funding/424/SF424_RR_Guide_General_VerC.pdf NIH Grants Guide] <br>
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Lecture 13 (3/22/16) No Slides. Grant review day <br>
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[[Media:575_Lecture_15.pptx |Lecture 14 (3/24/16) Slides]] Reading: Chapter 8 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_16.pptx |Lecture 15 (3/29/16) Slides]] <br>
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[[Media:575_Paper_Review_4.pptx |Lecture 16 (4/5/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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Lecture 17 (4/12/16) No Slides. Review of Specific Aims Pages Day <br>
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[[Media:575_Paper_Review_5.pptx |Lecture 18 (4/12/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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Lecture 19 (4/19/16) No Slides. Sualy helped with research project prep <br>
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== Week 2 ==
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== Literature Review ==
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'''Reading'''<br>
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Here's where you can find the schedule of journal papers: [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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'''STEM CELLS'''<br>
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External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
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'''HSCs'''<br>
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== Grants for Review Day (3/22) ==
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External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
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[[Media:575_Grant1_2016.pdf |Grant 1]]<br>
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External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
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[[Media:575_Grant2_2016.pdf |Grant 2]]<br>
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[[Media:575_Grant3_2016.pdf |Grant 3]]<br>
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'''MSCs'''<br>
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[[Media:575_Grant4_2016.pdf |Grant 4]]<br>
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External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
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[[Media:575_Grant5_2016.pdf |Grant 5]]<br>
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External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
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'''Lecture Slides'''<br>
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[[Media:590B_Lecture_3.pdf | Lecture 3 Slides]]<br>
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[[Media:590B_Lecture_4.pptx | Lecture 4 Slides]]<br>
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== Week 3 ==
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'''Reading'''<br>
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Tissue Engineering Chapters 3 & 6<br>
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'''ESCs'''<br>
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External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
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External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
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External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
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'''iPSCs'''<br>
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External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
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'''CELL ADHESION'''<br>
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External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
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External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
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External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
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[[Media:590B_Lecture_5.pptx | Lecture 5 Slides]]<br>
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[[Media:590B_Lecture_6.pptx | Lecture 6 Slides]]<br>
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== Week 4 ==
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'''Reading'''<br>
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Tissue Engineering Chapter 12<br>
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'''Lecture Slides'''<br>
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[[Media:590B_Lecture_7.pptx | Lecture 7 Slides]]<br>
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''anything below here hasn't been updated for 2013 yet''
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***
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== Week 8 ==
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Lecture 12, 3/13: <br>
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Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
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Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
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== Week 7 ==
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Lecture 11, 3/8: <br>
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See your lecture slides!
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== Week 6 ==
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Lecture 8, 2/28: <br>
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Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
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Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
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biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
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microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
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Lecture 9, 3/1: <br>
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first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
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gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
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biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
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3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
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3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
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3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
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== Week 5 ==
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External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
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External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
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External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
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External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
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Current revision

      Home                 Documents               Assignments               Wiki Schedule                 Wiki Pages                 Course Syllabus


Schedule for Semester

Updated 1-8-16

Lecture Slides and Assigned Reading

Lecture 1 (1/21/16) Slides Reading: Chapter 1 of the wiki book 575 Wikis
Lecture 2 (1/28/16) Slides Reading: Chapter 2 of the wiki book 575 Wikis
Lecture 3 (2/2/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 4 (2/4/16) Slides Reading: Chapter 3 of the wiki book 575 Wikis
Lecture 5 (2/9/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 6 (2/18/16) Slides Reading: Chapter 4 of the wiki book 575 Wikis
Lecture 7 (2/23/16) No Slides. Reading: Chapter 4 of the wiki book 575 Wikis
Lecture 8 (2/25/16) Slides Reading: Chapter 7 of the wiki book 575 Wikis
Lecture 9 (3/1/16) Slides Reading: Chapter 8 of the wiki book 575 Wikis
Lecture 10 (3/3/16) Slides Reading: Chapter 8 of the wiki book 575 Wikis
Lecture 11 (3/8/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 12 (3/10/16) Slides Reading: NIH Grants Guide
Lecture 13 (3/22/16) No Slides. Grant review day
Lecture 14 (3/24/16) Slides Reading: Chapter 8 of the wiki book 575 Wikis
Lecture 15 (3/29/16) Slides
Lecture 16 (4/5/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 17 (4/12/16) No Slides. Review of Specific Aims Pages Day
Lecture 18 (4/12/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 19 (4/19/16) No Slides. Sualy helped with research project prep

Literature Review

Here's where you can find the schedule of journal papers: Paper Titles, Schedule

Grants for Review Day (3/22)

Grant 1
Grant 2
Grant 3
Grant 4

Grant 5
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