ChemEng590BDocs

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Current revision (15:30, 19 March 2013) (view source)
 
(17 intermediate revisions not shown.)
Line 2: Line 2:
<div style="padding: 10px; width: 748px; border: 3px solid #000000;">
<div style="padding: 10px; width: 748px; border: 3px solid #000000;">
__NOTOC__
__NOTOC__
-
== Week 1 ==
+
== Week 10 (after spring break) ==
-
'''Reading'''<br>
+
Lecture 11<br>
-
Tissue Engineering Chapters 1-4<br>
+
'''Readings'''<br>
-
External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
+
Tissue Engineering Chapter 5<br>
-
External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
+
'''Lecture Slides'''<br>
'''Lecture Slides'''<br>
-
[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
+
No slides for this lecture<br>
-
[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
+
-
== Week 2 ==
+
Lecture 12<br>
 +
'''Readings'''<br>
 +
See your lecture slides!  There are a lot of papers in there<br>
 +
 
 +
'''Lecture Slides'''
 +
[[Media:590B_Lecture_12.pptx |Lecture 12 Slides]]<br>
 +
== Week 8 ==
 +
Lecture 10<br>
 +
External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
 +
External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
 +
External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
 +
External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_10.pptx |Lecture 10 Slides]]<br>
 +
 
 +
== Week 7 ==
 +
Lecture 9<br>
 +
Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
 +
Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
 +
biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
 +
microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_9.pptx |Lecture 9 Slides]]<br>
 +
 
 +
== Weeks 4 and 6 ==
'''Reading'''<br>
'''Reading'''<br>
-
'''STEM CELLS'''<br>
+
Tissue Engineering Chapters 3 & 6<br>
-
External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
+
-
'''HSCs'''<br>
+
'''CELL ADHESION'''<br>
-
External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
+
External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
-
External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
+
External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
 +
External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
-
'''MSCs'''<br>
+
'''Lecture Slides'''<br>
-
External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
+
[[Media:590B_Lecture_6.pptx | Lecture 6 Slides]]<br>
-
External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
+
 
 +
== Also Week 6 ==
 +
'''Reading'''<br>
 +
Tissue Engineering Chapter 12<br>
'''Lecture Slides'''<br>
'''Lecture Slides'''<br>
-
[[Media:590B_Lecture_3.pdf | Lecture 3 Slides]]<br>
+
[[Media:590B_Lecture_7.pptx | Lecture 7 Slides]]<br>
-
[[Media:590B_Lecture_4.pptx | Lecture 4 Slides]]<br>
+
 +
== Week 5 ==
 +
'''Reading'''<br>
 +
NIH grant guidelines page [http://grants.nih.gov/grants/funding/424/index.htm NIH link]<br>
 +
 +
'''grants for review day'''<br>
 +
[[Media:590B_Grant_1_for_review.docx | Group 1 Grant Review]]<br>
 +
[[Media:590B_Grant_2_for_review.docx | Group 2 Grant Review]]<br>
 +
[[Media:590B_Grant_3_for_review.docx | Group 3 Grant Review]]<br>
 +
[[Media:590B_specific_aims_sample.docx | Sample Specific Aims Page]]<br>
 +
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_8.pptx | Lecture 8 Slides]]<br>
== Week 3 ==
== Week 3 ==
 +
'''Reading'''<br>
 +
Tissue Engineering Chapters 3 & 6<br>
 +
'''ESCs'''<br>
'''ESCs'''<br>
External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
Line 38: Line 79:
'''iPSCs'''<br>
'''iPSCs'''<br>
External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
-
 
-
'''CELL ADHESION'''<br>
 
-
External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
 
-
External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
 
-
External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
 
[[Media:590B_Lecture_5.pptx | Lecture 5 Slides]]<br>
[[Media:590B_Lecture_5.pptx | Lecture 5 Slides]]<br>
-
[[Media:590B_Lecture_6.pptx | Lecture 6 Slides]]<br>
 
-
''anything below here hasn't been updated for 2013 yet''
+
== Week 2 ==
-
***
+
'''Reading'''<br>
 +
'''STEM CELLS'''<br>
 +
External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
-
== Week 8 ==
+
'''HSCs'''<br>
-
Lecture 12, 3/13: <br>
+
External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
-
Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
+
External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
-
Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
+
-
== Week 7 ==
+
'''MSCs'''<br>
-
Lecture 11, 3/8: <br>
+
External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
-
See your lecture slides!
+
External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_3.pdf | Lecture 3 Slides]]<br>
 +
[[Media:590B_Lecture_4.pptx | Lecture 4 Slides]]<br>
 +
 
 +
== Week 1 ==
 +
'''Reading'''<br>
 +
Tissue Engineering Chapters 1-4<br>
 +
External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
 +
External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
 +
[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
-
== Week 6 ==
 
-
Lecture 8, 2/28: <br>
 
-
Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
 
-
Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
 
-
biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
 
-
microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
 
 +
== Likely Week 11 ==
 +
'''Readings'''<br>
Lecture 9, 3/1: <br>
Lecture 9, 3/1: <br>
first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
Line 74: Line 120:
3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
-
== Week 5 ==
+
'''Lecture Slides'''<br>
-
External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
+
[[Media:590B_Lecture_14.pptx |Lecture 14 Slides]]<br>
-
External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
+
 
-
External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
+
[[Media:590B_Lecture_15.pptx |Lecture 15 Slides]]<br>
-
External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
+
 
 +
== Likely Week 13 ==
 +
'''Readings'''<br>
 +
Tissue Engineering Chapters 10 and 11<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_16.pptx |Lecture 16 Slides]]<br>

Current revision

       Home                      Documents                     Wiki Schedule                         Wiki Pages                         Course Syllabus


Week 10 (after spring break)

Lecture 11
Readings
Tissue Engineering Chapter 5

Lecture Slides
No slides for this lecture

Lecture 12
Readings
See your lecture slides! There are a lot of papers in there

Lecture Slides Lecture 12 Slides

Week 8

Lecture 10
External Reading: Patterning of growth factors pubmed link
External Reading: Modeling Interstitial flow pubmed link
External Reading: Chemotaxis assays review pubmed link
External Reading: Chemotaxis and directed migration pubmed link

Lecture Slides
Lecture 10 Slides

Week 7

Lecture 9
Patterned RGDs Wiley link
Engineered surfaces review pubmed link
biphasic migration pubmed link
microfluidics pubmed link

Lecture Slides
Lecture 9 Slides

Weeks 4 and 6

Reading
Tissue Engineering Chapters 3 & 6

CELL ADHESION
External Reading: Self-assembled monolayers pubmed link
External Reading: adhesion and stem cell differentiation pubmed link
External Reading: cell size and death pubmed link

Lecture Slides
Lecture 6 Slides

Also Week 6

Reading
Tissue Engineering Chapter 12

Lecture Slides
Lecture 7 Slides

Week 5

Reading
NIH grant guidelines page NIH link

grants for review day
Group 1 Grant Review
Group 2 Grant Review
Group 3 Grant Review
Sample Specific Aims Page

Lecture Slides
Lecture 8 Slides

Week 3

Reading
Tissue Engineering Chapters 3 & 6

ESCs
External Reading: ESCs from blastocysts pubmed link
External Reading: ESCs from blastocysts, 2 pubmed link
External Reading: Geron's ESC-to-oligodendrocyte pubmed link

iPSCs
External Reading: Seminal iPSC paper pubmed link

Lecture 5 Slides

Week 2

Reading
STEM CELLS
External Reading: Comprehensive stem cell review pubmed link

HSCs
External Reading: HSC to hepatocyte differentiation pubmed link
External Reading: Transplanting HSCs pubmed link

MSCs
External Reading: MSC differentiation potential pubmed link
External Reading: Engler, MSCs and stiffness pubmed link

Lecture Slides
Lecture 3 Slides
Lecture 4 Slides

Week 1

Reading
Tissue Engineering Chapters 1-4
External Reading: Sharp/Langer, Promoting Convergence pubmed link
External Reading: Huebsch and Mooney, Biomaterials pubmed link

Lecture Slides
Lecture 1 Slides
Lecture 2 Slides


Likely Week 11

Readings
Lecture 9, 3/1:
first stiffness/migration paper pubmed link
gradients and stiffness ACS link
biphasic migration and stiffness pubmed link
3D stiffness in collagen pubmed link
3D scaffold stiffness pubmed link
3D matrigel stiffness PNAS link

Lecture Slides
Lecture 14 Slides

Lecture 15 Slides

Likely Week 13

Readings
Tissue Engineering Chapters 10 and 11

Lecture Slides

Lecture 16 Slides
Personal tools