ChemEng590BDocs

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__NOTOC__
__NOTOC__
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== Week 1 ==
+
== Week 10 (after spring break) ==
-
Tissue Engineering Chapters 1-4<br>
+
Lecture 11<br>
-
External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
+
'''Readings'''<br>
-
External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
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Tissue Engineering Chapter 5<br>
-
 
+
 +
'''Lecture Slides'''<br>
 +
No slides for this lecture<br>
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''anything below here hasn't been updated for 2013 yet''
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Lecture 12<br>
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***
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'''Readings'''<br>
 +
See your lecture slides!  There are a lot of papers in there<br>
 +
'''Lecture Slides'''
 +
[[Media:590B_Lecture_12.pptx |Lecture 12 Slides]]<br>
== Week 8 ==
== Week 8 ==
-
Lecture 12, 3/13: <br>
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Lecture 10<br>
-
Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
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External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
-
Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
+
External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
 +
External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
 +
External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
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== Week 7 ==
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'''Lecture Slides'''<br>
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Lecture 11, 3/8: <br>
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[[Media:590B_Lecture_10.pptx |Lecture 10 Slides]]<br>
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See your lecture slides!
+
-
== Week 6 ==
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== Week 7 ==
-
Lecture 8, 2/28: <br>
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Lecture 9<br>
Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
Line 28: Line 33:
microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
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Lecture 9, 3/1: <br>
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'''Lecture Slides'''<br>
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first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
+
[[Media:590B_Lecture_9.pptx |Lecture 9 Slides]]<br>
-
gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
+
-
biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
+
-
3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
+
-
3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
+
-
3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
+
-
== Week 5 ==
+
== Weeks 4 and 6 ==
-
External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
+
'''Reading'''<br>
-
External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
+
Tissue Engineering Chapters 3 & 6<br>
-
External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
+
-
External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
+
-
== Week 4 ==
 
-
External Reading: All are ECM and cancer
 
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1: [http://www.ncbi.nlm.nih.gov/pubmed/19931152 pubmed link]<br>
 
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2: [http://www.ncbi.nlm.nih.gov/pubmed/16169468 pubmed link]<br>
 
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3: [http://www.ncbi.nlm.nih.gov/pubmed/17190588 pubmed link]<br>
 
-
 
-
== Week 3 ==
 
'''CELL ADHESION'''<br>
'''CELL ADHESION'''<br>
External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
Line 54: Line 45:
External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
-
== Week 2 ==
+
'''Lecture Slides'''<br>
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'''STEM CELLS'''<br>
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[[Media:590B_Lecture_6.pptx | Lecture 6 Slides]]<br>
-
External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
+
-
'''MSCs'''<br>
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== Also Week 6 ==
-
External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
+
'''Reading'''<br>
-
External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
+
Tissue Engineering Chapter 12<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_7.pptx | Lecture 7 Slides]]<br>
 +
 
 +
== Week 5 ==
 +
'''Reading'''<br>
 +
NIH grant guidelines page [http://grants.nih.gov/grants/funding/424/index.htm NIH link]<br>
 +
 
 +
'''grants for review day'''<br>
 +
[[Media:590B_Grant_1_for_review.docx | Group 1 Grant Review]]<br>
 +
[[Media:590B_Grant_2_for_review.docx | Group 2 Grant Review]]<br>
 +
[[Media:590B_Grant_3_for_review.docx | Group 3 Grant Review]]<br>
 +
[[Media:590B_specific_aims_sample.docx | Sample Specific Aims Page]]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_8.pptx | Lecture 8 Slides]]<br>
 +
 
 +
== Week 3 ==
 +
'''Reading'''<br>
 +
Tissue Engineering Chapters 3 & 6<br>
'''ESCs'''<br>
'''ESCs'''<br>
Line 66: Line 76:
External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
 +
 +
'''iPSCs'''<br>
 +
External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
 +
 +
[[Media:590B_Lecture_5.pptx | Lecture 5 Slides]]<br>
 +
 +
== Week 2 ==
 +
'''Reading'''<br>
 +
'''STEM CELLS'''<br>
 +
External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
'''HSCs'''<br>
'''HSCs'''<br>
Line 71: Line 91:
External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
-
'''iPSCs'''<br>
+
'''MSCs'''<br>
-
External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
+
External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
 +
External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_3.pdf | Lecture 3 Slides]]<br>
 +
[[Media:590B_Lecture_4.pptx | Lecture 4 Slides]]<br>
 +
 
 +
== Week 1 ==
 +
'''Reading'''<br>
 +
Tissue Engineering Chapters 1-4<br>
 +
External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
 +
External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_1.pptx |Lecture 1 Slides]]<br>
 +
[[Media:590B_Lecture_2.pptx |Lecture 2 Slides]]<br>
 +
 
 +
 
 +
== Likely Week 11 ==
 +
'''Readings'''<br>
 +
Lecture 9, 3/1: <br>
 +
first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
 +
gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
 +
biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
 +
3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
 +
3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
 +
3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_14.pptx |Lecture 14 Slides]]<br>
 +
 
 +
[[Media:590B_Lecture_15.pptx |Lecture 15 Slides]]<br>
 +
 
 +
== Likely Week 13 ==
 +
'''Readings'''<br>
 +
Tissue Engineering Chapters 10 and 11<br>
 +
 
 +
'''Lecture Slides'''<br>
 +
[[Media:590B_Lecture_16.pptx |Lecture 16 Slides]]<br>

Current revision

       Home                      Documents                     Wiki Schedule                         Wiki Pages                         Course Syllabus


Week 10 (after spring break)

Lecture 11
Readings
Tissue Engineering Chapter 5

Lecture Slides
No slides for this lecture

Lecture 12
Readings
See your lecture slides! There are a lot of papers in there

Lecture Slides Lecture 12 Slides

Week 8

Lecture 10
External Reading: Patterning of growth factors pubmed link
External Reading: Modeling Interstitial flow pubmed link
External Reading: Chemotaxis assays review pubmed link
External Reading: Chemotaxis and directed migration pubmed link

Lecture Slides
Lecture 10 Slides

Week 7

Lecture 9
Patterned RGDs Wiley link
Engineered surfaces review pubmed link
biphasic migration pubmed link
microfluidics pubmed link

Lecture Slides
Lecture 9 Slides

Weeks 4 and 6

Reading
Tissue Engineering Chapters 3 & 6

CELL ADHESION
External Reading: Self-assembled monolayers pubmed link
External Reading: adhesion and stem cell differentiation pubmed link
External Reading: cell size and death pubmed link

Lecture Slides
Lecture 6 Slides

Also Week 6

Reading
Tissue Engineering Chapter 12

Lecture Slides
Lecture 7 Slides

Week 5

Reading
NIH grant guidelines page NIH link

grants for review day
Group 1 Grant Review
Group 2 Grant Review
Group 3 Grant Review
Sample Specific Aims Page

Lecture Slides
Lecture 8 Slides

Week 3

Reading
Tissue Engineering Chapters 3 & 6

ESCs
External Reading: ESCs from blastocysts pubmed link
External Reading: ESCs from blastocysts, 2 pubmed link
External Reading: Geron's ESC-to-oligodendrocyte pubmed link

iPSCs
External Reading: Seminal iPSC paper pubmed link

Lecture 5 Slides

Week 2

Reading
STEM CELLS
External Reading: Comprehensive stem cell review pubmed link

HSCs
External Reading: HSC to hepatocyte differentiation pubmed link
External Reading: Transplanting HSCs pubmed link

MSCs
External Reading: MSC differentiation potential pubmed link
External Reading: Engler, MSCs and stiffness pubmed link

Lecture Slides
Lecture 3 Slides
Lecture 4 Slides

Week 1

Reading
Tissue Engineering Chapters 1-4
External Reading: Sharp/Langer, Promoting Convergence pubmed link
External Reading: Huebsch and Mooney, Biomaterials pubmed link

Lecture Slides
Lecture 1 Slides
Lecture 2 Slides


Likely Week 11

Readings
Lecture 9, 3/1:
first stiffness/migration paper pubmed link
gradients and stiffness ACS link
biphasic migration and stiffness pubmed link
3D stiffness in collagen pubmed link
3D scaffold stiffness pubmed link
3D matrigel stiffness PNAS link

Lecture Slides
Lecture 14 Slides

Lecture 15 Slides

Likely Week 13

Readings
Tissue Engineering Chapters 10 and 11

Lecture Slides

Lecture 16 Slides
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