ChemEng575Docs

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__NOTOC__
__NOTOC__
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== Week 1 ==
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== Schedule for Semester ==
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Tissue Engineering Chapters 1-4
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Updated 1-8-16<br>
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External Reading: Sharp/Langer, Promoting Convergence [http://www.ncbi.nlm.nih.gov/pubmed?term=sharp%20langer%20promoting%20convergence pubmed link]<br>
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[[Image:575_Schedule_2016.jpg | 750px]]<br>
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External Reading: Huebsch and Mooney, Biomaterials [http://www.ncbi.nlm.nih.gov/pubmed/19940912 pubmed link]<br>
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== Lecture Slides and Assigned Reading == 
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[[Media:575_Lecture_1.pptx |Lecture 1 (1/21/16) Slides]] Reading: Chapter 1 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_2.pptx |Lecture 2 (1/28/16) Slides]] Reading: Chapter 2 of the wiki book [[575 Wikis]] <br>
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[[Media:575_Lecture_3.pptx |Lecture 3 (2/2/16) Slides]] Reading: Paper Review [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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[[Media:575_Lecture_4.pptx |Lecture 4 (2/4/16) Slides]] Reading: Chapter 3 of the wiki book [[575 Wikis]] <br>
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== Literature Review ==
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Here's where you can find the schedule of journal papers: [[590B Lit Schedule|Paper Titles, Schedule]] <br>
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''anything below here hasn't been updated for 2013 yet''
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== Readings 2 be updated for 2016! ==
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***
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== Week 8 ==
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Need help with biology?  Check out MBOC (Alberts) from the library, Great resource.<br>
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Lecture 12, 3/13: <br>
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Collective cell migration review [http://pubs.rsc.org/en/content/articlelanding/2010/ib/c0ib00052c IBiol link]<br>
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Individual vs collective migration [http://jcb.rupress.org/content/188/1/11.full JCB link]<br>
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== Week 7 ==
 
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Lecture 11, 3/8: <br>
 
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See your lecture slides!
 
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== Week 6 ==
 
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Lecture 8, 2/28: <br>
 
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Patterned RGDs [http://onlinelibrary.wiley.com/doi/10.1002/anie.201002699/abstract Wiley link]<br>
 
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Engineered surfaces review [http://www.ncbi.nlm.nih.gov/pubmed/19864174 pubmed link]<br>
 
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biphasic migration [http://www.ncbi.nlm.nih.gov/pubmed/8335696 pubmed link]<br>
 
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microfluidics [http://www.ncbi.nlm.nih.gov/pubmed/15986641 pubmed link]<br>
 
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Lecture 9, 3/1: <br>
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'''Lecture 7''' 2/19/15<br>
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first stiffness/migration paper [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300921/ pubmed link]<br>
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Chapter 4 of the wiki book [[575 Wikis]]
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gradients and stiffness [http://pubs.acs.org/doi/abs/10.1021/la026403p ACS link]<br>
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biphasic migration and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/15669099 pubmed link]<br>
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3D stiffness in collagen [http://www.ncbi.nlm.nih.gov/pubmed/18621811 pubmed link]<br>
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3D scaffold stiffness [http://www.ncbi.nlm.nih.gov/pubmed/21191996 pubmed link]<br>
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3D matrigel stiffness [http://www.pnas.org/content/103/29/10889 PNAS link]<br>
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== Week 5 ==
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'''Lecture 8''' 2/24/15<br>
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External Reading: Patterning of growth factors [http://www.ncbi.nlm.nih.gov/pubmed/18850272 pubmed link]<br>
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Paper Review [[Media:McBeath_CellShape.pdf | Cell Shape and Stem Cells]]<br>
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External Reading: Modeling Interstitial flow [http://www.ncbi.nlm.nih.gov/pubmed/16603487 pubmed link]<br>
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External Reading: Chemotaxis assays review [http://www.ncbi.nlm.nih.gov/pubmed/20023801 pubmed link]<br>
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External Reading: Chemotaxis and directed migration [http://www.ncbi.nlm.nih.gov/pubmed/19603038 pubmed link]<br>
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== Week 4 ==
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'''Lecture 9''' 2/26/15 <br>
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External Reading: All are ECM and cancer
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Chapter 4 of the wiki book [[575 Wikis]]
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1: [http://www.ncbi.nlm.nih.gov/pubmed/19931152 pubmed link]<br>
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2: [http://www.ncbi.nlm.nih.gov/pubmed/16169468 pubmed link]<br>
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3: [http://www.ncbi.nlm.nih.gov/pubmed/17190588 pubmed link]<br>
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== Week 3 ==
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'''Lecture 10''' 3/10/15 <br>
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'''CELL ADHESION'''<br>
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Paper Review [[Media:Mechanics_StemCells_Review.pdf | Mechanical Regulation of Stem Cells]]<br>
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External Reading: Self-assembled monolayers [http://www.ncbi.nlm.nih.gov/pubmed/15005605 pubmed link]<br>
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External Reading: adhesion and stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/15068789 pubmed link]<br>
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External Reading: cell size and death [http://www.ncbi.nlm.nih.gov/pubmed/8171320 pubmed link]<br>
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== Week 2 ==
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'''Lecture 11''' 3/12/15 <br>
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'''STEM CELLS'''<br>
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[http://grants.nih.gov/grants/grants_process.htm NIH grants guide]
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External Reading: Comprehensive stem cell review [http://www.ncbi.nlm.nih.gov/pubmed/10647940 pubmed link]<br>
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'''MSCs'''<br>
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'''Lecture 12'''<br>
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External Reading: MSC differentiation potential [http://www.ncbi.nlm.nih.gov/pubmed/10102814 pubmed link]<br>
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Paper Review [[Media:FOXN1_Thymus.pdf | Engineered Thymus]]<br>
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External Reading: Engler, MSCs and stiffness [http://www.ncbi.nlm.nih.gov/pubmed/16923388 pubmed link]<br>
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'''ESCs'''<br>
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'''Lecture 13'''<br>
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External Reading: ESCs from blastocysts [http://www.ncbi.nlm.nih.gov/pubmed/14999088 pubmed link]<br>
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Paper Review [[Media:3D_Injectable_Microniches.pdf | Ischemia and Gels]]<br>
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External Reading: ESCs from blastocysts, 2 [http://www.ncbi.nlm.nih.gov/pubmed/9804556 pubmed link]<br>
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External Reading: Geron's ESC-to-oligodendrocyte [http://www.ncbi.nlm.nih.gov/pubmed/15888645 pubmed link]<br>
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'''HSCs'''<br>
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'''Lecture 14'''<br>
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External Reading: HSC to hepatocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/11062533 pubmed link]<br>
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Grant review day. See your assigned grants at [[ChemEng590BAssignments]]
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External Reading: Transplanting HSCs [http://www.ncbi.nlm.nih.gov/pubmed/16641398 pubmed link]<br>
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'''iPSCs'''<br>
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'''Lecture 15'''<br>
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External Reading: Seminal iPSC paper [http://www.ncbi.nlm.nih.gov/pubmed/16904174 pubmed link]<br>
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Paper Review [[Media:Migration_and_Cytoskeleton.pdf | Review of Cell Cytoskeleton]]<br>
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'''Lecture 16'''<br>
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Chapter 7 of the wiki book [[575 Wikis]]
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'''Lecture 17'''<br>
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Paper Review [[Media:Epithelial_Wound_Healing.pdf | Epithelial Cells and Forces]]<br>
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'''Lecture 18'''<br>
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Chapter 7 of the wiki book [[575 Wikis]]
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'''Lecture 19'''<br>
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Paper Review [[Media:PLoS_Origami.pdf | Cell Origami]]<br>
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'''Lecture 20'''<br>
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Paper Review [[Media:Brangwynne_droplets.pdf | Germline Droplets]]<br>

Current revision

      Home                 Documents               Assignments               Wiki Schedule                 Wiki Pages                 Course Syllabus


Schedule for Semester

Updated 1-8-16

Lecture Slides and Assigned Reading

Lecture 1 (1/21/16) Slides Reading: Chapter 1 of the wiki book 575 Wikis
Lecture 2 (1/28/16) Slides Reading: Chapter 2 of the wiki book 575 Wikis
Lecture 3 (2/2/16) Slides Reading: Paper Review Paper Titles, Schedule
Lecture 4 (2/4/16) Slides Reading: Chapter 3 of the wiki book 575 Wikis

Literature Review

Here's where you can find the schedule of journal papers: Paper Titles, Schedule

Readings 2 be updated for 2016!

Need help with biology? Check out MBOC (Alberts) from the library, Great resource.


Lecture 7 2/19/15
Chapter 4 of the wiki book 575 Wikis

Lecture 8 2/24/15
Paper Review Cell Shape and Stem Cells

Lecture 9 2/26/15
Chapter 4 of the wiki book 575 Wikis

Lecture 10 3/10/15
Paper Review Mechanical Regulation of Stem Cells

Lecture 11 3/12/15
NIH grants guide

Lecture 12
Paper Review Engineered Thymus

Lecture 13
Paper Review Ischemia and Gels

Lecture 14
Grant review day. See your assigned grants at ChemEng590BAssignments

Lecture 15
Paper Review Review of Cell Cytoskeleton

Lecture 16
Chapter 7 of the wiki book 575 Wikis

Lecture 17
Paper Review Epithelial Cells and Forces

Lecture 18
Chapter 7 of the wiki book 575 Wikis

Lecture 19
Paper Review Cell Origami

Lecture 20

Paper Review Germline Droplets
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