# Cell cycle analysis

(Difference between revisions)
 Revision as of 09:43, 15 August 2008 (view source)← Previous diff Revision as of 09:59, 15 August 2008 (view source)Next diff → Line 2: Line 2: C period = the time for a round of chromosome replication C period = the time for a round of chromosome replication + D period = the time between the end of a round of chromosome replication and cell                division D period = the time between the end of a round of chromosome replication and cell                division - #Determination of initiation age (ai) and C+D: + #Determination of initiation age (ai) and C+D:[[Image:Theoretical_age_distr.jpg|left|200px]] - [[Image:Theoretical_age_distr.jpg|left|250px]] + From flow cytometry analysis of cells treated with rifampicin and cephalexin (run-out histogram) the proportions of cells that had not initiated replication at the time of drug action (4-origin-cells, streaked) and cells that had initiated (8-origin-cells) can be estimated.The initiation age (ai) can be found from the theoretical age distribution described by this formula, - From flow cytometry analysis of cells treated with rifampicin and cephalexin (run-out histogram) the proportions of cells that had notinitiated replication at the time of drug action (4-origin-cells, streaked) and cells that initiated (8-origin-cells) can be estimated.The initiation age (ai) can be found from thetheoretical age distribution described by this formula, + - '''F = 2 - 2((τ-ai)/τ)''' + '''F = 2 - 2((τ-ai)/τ)''' - where F is the fraction of cells that had not initiated and  is the generation time, or from the estimated graph of the theoretical age distribution (streaked portion). + where F is the fraction of cells that had not initiated and τ is the generation time, or from the estimated graph of the theoretical age distribution (streaked portion). - The C+D period is estimated from the initiation age (ai), the generation time () and the number of generations spanned per cell cycle. + + + + + The C+D period is estimated from the initiation age (ai), the generation time (τ) and the number of generations spanned per cell cycle. + + Example:

## Revision as of 09:59, 15 August 2008

Cell cycle analysis of Escherichia coli cells

C period = the time for a round of chromosome replication

D period = the time between the end of a round of chromosome replication and cell division

1. Determination of initiation age (ai) and C+D:

From flow cytometry analysis of cells treated with rifampicin and cephalexin (run-out histogram) the proportions of cells that had not initiated replication at the time of drug action (4-origin-cells, streaked) and cells that had initiated (8-origin-cells) can be estimated.The initiation age (ai) can be found from the theoretical age distribution described by this formula,

F = 2 - 2((τ-ai)/τ)

where F is the fraction of cells that had not initiated and τ is the generation time, or from the estimated graph of the theoretical age distribution (streaked portion).

The C+D period is estimated from the initiation age (ai), the generation time (τ) and the number of generations spanned per cell cycle.

Example: