CH391L/S13/CAD
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==Representing Synthetic Biology Designs == | ==Representing Synthetic Biology Designs == | ||
| - | [[Image:TinkerCellSBOLRepresentation.png| | + | [[Image:TinkerCellSBOLRepresentation.png|frame|right|TinkerCell representation of parts in a lactose-inducible GFP part]] |
The [http://www.sbolstandard.org Synthetic Biology Open Language] is an open-source standard for representing designs consisting of both DNA sequence information and higher level annotation of parts with defined roles and behaviors <cite>Galdzicki2011</cite>. The core specification of this system has been developed as an RFC <cite>SBOLRFC</cite>. Several different [http://www.sbolstandard.org/sbolstandard/software-tools-using-sbol synthetic biology CAD software programs] use this format. Representation at this higher level of parts can be visualized and simulated in some of these systems (e.g., [http://www.tinkercell.com/ TinkerCell]). | The [http://www.sbolstandard.org Synthetic Biology Open Language] is an open-source standard for representing designs consisting of both DNA sequence information and higher level annotation of parts with defined roles and behaviors <cite>Galdzicki2011</cite>. The core specification of this system has been developed as an RFC <cite>SBOLRFC</cite>. Several different [http://www.sbolstandard.org/sbolstandard/software-tools-using-sbol synthetic biology CAD software programs] use this format. Representation at this higher level of parts can be visualized and simulated in some of these systems (e.g., [http://www.tinkercell.com/ TinkerCell]). | ||
Revision as of 13:56, 2 February 2013
Representing Synthetic Biology Designs
TinkerCell representation of parts in a lactose-inducible GFP part
The Synthetic Biology Open Language is an open-source standard for representing designs consisting of both DNA sequence information and higher level annotation of parts with defined roles and behaviors [1]. The core specification of this system has been developed as an RFC [2]. Several different synthetic biology CAD software programs use this format. Representation at this higher level of parts can be visualized and simulated in some of these systems (e.g., TinkerCell).
References
- Galdzicki M, Rodriguez C, Chandran D, Sauro HM, and Gennari JH. . pmid:21390321.
Standard biological parts knowledgebase - http://dspace.mit.edu/handle/1721.1/66172
Synthetic Biology Open Language (SBOL) Version 1.0.0
