CH391L/S12/Assignments: Difference between revisions

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*Peter Otoupal
*Peter Otoupal


== Future topic ideas ==
== Other topic ideas ==
 
* Directed evolution (plasmid-based in vivo evolution of thermostability, altered substrate specificity, etc).
* CAD systems for synthetic biology
 
== For Monday, February 27, 2012 ==
 
* Comment on or add to old topics.
 
=== New Topics: Basic Gene Construction ===
 
* Transcriptional promoters - EMPTY
* Transcription termination - EMPTY
* Translation. Ribosome binding sites and codon optimization - EMPTY


== For Monday, February 20, 2012 ==
== For Monday, February 20, 2012 ==
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=== New Topics: Chassis and Backbones ===
=== New Topics: Chassis and Backbones ===
* Host organisms (general properties of common ones, new ones that are being developed) - Michael Hammerling
* Artificial chromosomes and plasmids - replication origins - EMPTY
* Artificial chromosomes and plasmids - replication origins - EMPTY
* Selectable genetic markers + toxin/anti-toxins - Brian Renda
* Selectable genetic markers (Ab resistance, etc.) - EMPTY
* Toxin/anti-toxins, plasmid addiction systems - Brian Renda
* Counter-selectable genetic markers - Erik Quandt
* Counter-selectable genetic markers - Erik Quandt


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=== New Topics: Optimizing Parts and their Interactions ===
=== New Topics: Optimizing Parts and their Interactions ===


* Gene/genome synthesis/Gibson assembly - Joe Hanson
* Host organisms (general properties of common ones, new ones that are being developed) - Michael Hammerling
* Metabolic engineering - Razan Alnahhas
* Metabolic engineering - Razan Alnahhas
* Directed evolution
* CAD systems for synthetic biology


== For Monday, February 6, 2012 ==
== For Monday, February 6, 2012 ==
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=== New Topics: Assembling Biological Parts ===
=== New Topics: Assembling Biological Parts ===
* Restriction enzyme cloning & BioBricks/BglBricks assembly - Ben Slater
* Restriction enzyme cloning & BioBricks/BglBricks assembly - Ben Slater
* Gene/genome synthesis/Gibson assembly - Joe Hanson
* Advanced PCR techniques - Yi Kou
* Advanced PCR techniques - Yi Kou



Revision as of 07:40, 8 February 2012

In reverse chronological order...

Yet to make first presentation:

  • Logan Bachman
  • Michael Hammerling
  • Jon Laurent
  • Jeremy McLain
  • Peter Otoupal

Other topic ideas

  • Directed evolution (plasmid-based in vivo evolution of thermostability, altered substrate specificity, etc).
  • CAD systems for synthetic biology

For Monday, February 27, 2012

  • Comment on or add to old topics.

New Topics: Basic Gene Construction

  • Transcriptional promoters - EMPTY
  • Transcription termination - EMPTY
  • Translation. Ribosome binding sites and codon optimization - EMPTY

For Monday, February 20, 2012

  • Comment on or add to old topics.

New Topics: Chassis and Backbones

  • Artificial chromosomes and plasmids - replication origins - EMPTY
  • Selectable genetic markers (Ab resistance, etc.) - EMPTY
  • Toxin/anti-toxins, plasmid addiction systems - Brian Renda
  • Counter-selectable genetic markers - Erik Quandt

For Monday, February 13, 2012

  • Comment on or add to old topics.

New Topics: Optimizing Parts and their Interactions

  • Gene/genome synthesis/Gibson assembly - Joe Hanson
  • Host organisms (general properties of common ones, new ones that are being developed) - Michael Hammerling
  • Metabolic engineering - Razan Alnahhas

For Monday, February 6, 2012

  • Add a link to your user page to the CH391L Users Page.
  • Add something to your user page.
  • Comment on or add to old topics.

New Topics: Assembling Biological Parts

  • Restriction enzyme cloning & BioBricks/BglBricks assembly - Ben Slater
  • Advanced PCR techniques - Yi Kou

For Monday, January 30, 2012

New Topics: Finding Biological Parts

  • iGEM registry - Midhat Patel
  • bioprospecting / metagenomics - David Truong
  • directed evolution / in vitro selection - Adam Meyer
  • ancestral protein construction - Jared Ellefson