Butlin:Unix for Bioinformatics - basic tutorial: Revision history

28 January 2018

• curprev 11:2111:21, 28 January 2018‎ Helen Hipperson talk contribs‎ 38,734 bytes +48‎ →‎from Windows

26 January 2018

• curprev 10:0910:09, 26 January 2018‎ Helen Hipperson talk contribs‎ 38,686 bytes +298‎ →‎from Windows

27 September 2017

• curprev 07:5007:50, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,388 bytes +12‎ →‎fixed download link for example data ; comes from my Dropbox now
• curprev 06:2306:23, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 38,376 bytes +109‎ →‎Simple file renaming and TAB-completion
• curprev 05:3305:33, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,267 bytes −20‎ →‎removed the curly quotes plague
• curprev 05:2105:21, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 38,287 bytes +20‎ →‎fixed link for local download of Unix_tut_sequences
• curprev 05:1705:17, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,267 bytes +14‎ →‎fixed download link for Unix_tut_sequences.fastq.gz ; comes from my Dropbox now
• curprev 05:0105:01, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 38,253 bytes +2‎ /* TASK 2: My NGS library has finally been sequenced and my sequencing centre has informed me that the sequence data files are on one of their password protected servers ready for download. How do I get those many Gb large files into my iceberg account...
• curprev 04:1904:19, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,251 bytes +14‎ →‎fixed to file storage on iceberg
• curprev 04:1704:17, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 38,237 bytes −5‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 04:0604:06, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,242 bytes +48‎ →‎added ./configure command before make of samtools
• curprev 03:4903:49, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,194 bytes +47‎ →‎fixed wget command
• curprev 03:4703:47, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 38,147 bytes +466‎ →‎If you don't have have access to iceberg
• curprev 03:4603:46, 27 September 2017‎ Claudius E Kerth talk contribs‎ 37,681 bytes −493‎ →‎changed download link for samtools1.3 to use the sourceforge server
• curprev 03:3703:37, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,174 bytes +2‎ →‎set new link to website that explains permissions
• curprev 03:2803:28, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,172 bytes −40‎ →‎changed long Dropbox link to tiny url
• curprev 03:2403:24, 27 September 2017‎ Claudius E Kerth talk contribs‎ 38,212 bytes +744‎ →‎Added Cmd + TAB tip
• curprev 03:1503:15, 27 September 2017‎ Claudius E Kerth talk contribs‎ 37,468 bytes +47‎ →‎added new download link to example data, which is now on my private Dropbox
• curprev 02:3402:34, 27 September 2017‎ Claudius E Kerth talk contribs‎ 37,421 bytes +668‎ →‎Added troubleshooting ; made minor changes to explanantion ; fixed curly quotes
• curprev 01:3701:37, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 36,753 bytes −5‎ →‎Before you jump into this tutorial
• curprev 01:3401:34, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 36,758 bytes +125‎ →‎Some basics
• curprev 01:0201:02, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 36,633 bytes +179‎ →‎Before you jump into this tutorial
• curprev 00:4800:48, 27 September 2017‎ Claudius E Kerth talk contribs‎ m 36,454 bytes +77‎ →‎Before you jump into this tutorial

26 September 2017

• curprev 13:4413:44, 26 September 2017‎ Claudius E Kerth talk contribs‎ 36,377 bytes 0‎ →‎put definition of Unix to the front
• curprev 13:4013:40, 26 September 2017‎ Claudius E Kerth talk contribs‎ 36,377 bytes +961‎ →‎Added appeal not to copy-paste command lines

10 January 2017

• curprev 11:1311:13, 10 January 2017‎ Helen Hipperson talk contribs‎ 35,416 bytes −2‎ →‎Some basics
• curprev 09:5709:57, 10 January 2017‎ Helen Hipperson talk contribs‎ m 35,418 bytes +261‎ →‎Some basics

21 March 2016

• curprev 08:3008:30, 21 March 2016‎ Claudius E Kerth talk contribs‎ 35,157 bytes +1‎ →‎If you have access to iceberg
• curprev 08:2908:29, 21 March 2016‎ Claudius E Kerth talk contribs‎ 35,156 bytes +1‎ →‎If you have access to iceberg
• curprev 04:4004:40, 21 March 2016‎ Claudius E Kerth talk contribs‎ 35,155 bytes +528‎ →‎Before you jump into this tutorial
• curprev 04:2804:28, 21 March 2016‎ Claudius E Kerth talk contribs‎ 34,627 bytes +233‎ →‎Before you jump into this tutorial
• curprev 04:2104:21, 21 March 2016‎ Claudius E Kerth talk contribs‎ 34,394 bytes −505‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?

17 March 2016

• curprev 02:5902:59, 17 March 2016‎ Claudius E Kerth talk contribs‎ 34,899 bytes +16‎ →‎If you don't have access to iceberg

15 March 2016

• curprev 12:5212:52, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,883 bytes −23‎ →‎If you have access to iceberg
• curprev 12:3012:30, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,906 bytes +137‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 12:1112:11, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,769 bytes −73‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 12:0112:01, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,842 bytes +1‎ →‎How can I find files and directories in Unix?
• curprev 11:5511:55, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,841 bytes −4‎ /* TASK 2: My NGS library has finally been sequenced and my sequencing centre has informed me that the sequence data files are on one of their password protected servers ready for download. How do I get those many Gb large files into my iceberg accou
• curprev 11:5111:51, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,845 bytes +4‎ →‎If you have access to iceberg
• curprev 11:4311:43, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,841 bytes +112‎ →‎If you have access to iceberg
• curprev 11:4111:41, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,729 bytes +28‎ →‎If you have access to iceberg
• curprev 11:2411:24, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,701 bytes +2‎ /* TASK 2: My NGS library has finally been sequenced and my sequencing centre has informed me that the sequence data files are on one of their password protected servers ready for download. How do I get those many Gb large files into my iceberg accou
• curprev 10:5410:54, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,699 bytes +40‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 10:3110:31, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,659 bytes +154‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 09:3209:32, 15 March 2016‎ Claudius E Kerth talk contribs‎ 34,505 bytes +739‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 09:0009:00, 15 March 2016‎ Claudius E Kerth talk contribs‎ 33,766 bytes +117‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 08:5408:54, 15 March 2016‎ Claudius E Kerth talk contribs‎ 33,649 bytes +6‎ →‎TASK 1: How do I do a local install of a suite of programmes that come as C++ source code?
• curprev 08:4808:48, 15 March 2016‎ Claudius E Kerth talk contribs‎ 33,643 bytes +3‎ →‎If you have access to iceberg
• curprev 08:4608:46, 15 March 2016‎ Claudius E Kerth talk contribs‎ 33,640 bytes −24‎ →‎If you have access to iceberg
• curprev 06:0206:02, 15 March 2016‎ Claudius E Kerth talk contribs‎ 33,664 bytes +301‎ →‎Gearing up for work with files and directories