Biomod/2014/UCR/Breaking RNA/Acknowledgements: Difference between revisions

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{{UCR/Breaking-RNA/HEAD}}


<h1> Supplementary </h1>
<h3><font size="4.5">1.1 Oscillator Genes and Strands</font></h3>
::{| border = "2" class="wikitable" style="margin: 1em auto 1em auto;"
|-
! width = "20%" | DNA Oligonucleotides
! width = "10%" | Base Pair Length
! width = "70%" | Sequences 
|- align="center"
| '''G1''' Non-Template
| 83
| align="left" | 5'-<span style="color:red">TAA TAC GAC TCA CTA TAG GAT G</span>GC AGC GGA GAG TTG CTT GGA ATG CGT TAT AGT CTC TTA GGT GTG TTC GCA CAC CAC TCT CC-3'
|- align="center"
| '''G1''' Template
| 83
| align="left" | 5'-GGA GAG TGG TGT GCG AAC ACA CCT AAG AGA CTA TAA CGC ATT CCA AGC AAC TCT CCG CTG C<span style="color:red">CA TCC TAT AGT GAG TCG TAT TA</span>-3'
|- align="center"
| '''G2''' Non-Template
| 56
| align="left" | 5'-<span style="color:red">ATT TAG GTG ACA CTA TAG AGG CGA</span> GAA GCA GCA ATG ATA GTG GAA TTG ACT TAC GC-3'
|- align="center"
| '''G2''' Template
| 56
| align="left" | 5'-GCG TAA GTC AAT TCC ACT ATC ATT GCT GCT TC<span style="color:red">T CGC CTC TAT AGT GTC ACC TAA AT</span>-3'
|- align="center"
| '''G3''' Non-Template
| 52
| align="left" | 5'-<span style="color:red">TTC TAA TAC GAC TCA CTA TA</span>G CGT AAG TCA ATT CCA CTA TCA TTG CTG CTT C-3'
|- align="center"
| '''G3''' Template
| 52
| align="left" | 5'-GAA GCA GCA ATG ATA GTG GAA TTG ACT TAC GC<span style="color:red">T ATA GTG AGT CGT ATT AGA A</span>-3'
|- align="center"
| '''G4''' Non-Template
| 83
| align="left" | 5'-<span style="color:red">ATT TAG GTG ACA CTA TAG AGG CGA</span> CGT CGC CTC TCA ACG AAC CTT ACG CAA TAT CAG AGA ATC CAC ACA AGC GTG TGG TGA GAG G-3'
|- align="center"
| '''G4''' Template
| 83
| align="left" | 5'-CCT CTC ACC ACA CGC TTG TGT GGA TTC TCT GAT ATT GCG TAA GGT TCG TTG AGA GGC GAC G<span style="color:red">TC GCC TCT ATA GTG TCA CCT AAA T</span>-3'
|- align="center"
| '''k1'''
| 61
| align="left" | 5'-TexRd-CGT CGC CTC TCA ACG AAC CTT ACG CAA TAT CAG AGA ATC CAC ACA AGC GTG TGG TGA GAG G-IowaBlack-3'
|}​
<h3><font size="4.5">1.2 Bistable Genes and Strands</font></h3>
::{| border = "2" class="wikitable" style="margin: 1em auto 1em auto;"
|-
! width = "20%" | DNA Oligonucleotides
! width = "10%" | Base Pair Length
! width = "70%" | Sequences 
|- align="center"
| '''G1''' Non-Template
| 83
| align="left" | 5'-<span style="color:red">TAA TAC GAC TCA CTA TAG GAT G</span>GC AGC GGA GAG TTG CTT GGA ATG CGT TAT AGT CTC TTA GGT GTG TTC GCA CAC CAC TCT CC-3'
|- align="center"
| '''G1''' Template
| 83
| align="left" | 5'-GGA GAG TGG TGT GCG AAC ACA CCT AAG AGA CTA TAA CGC ATT CCA AGC AAC TCT CCG CTG C<span style="color:red">CA TCC TAT AGT GAG TCG TAT TA</span>-3'
|- align="center"
| '''G2''' Non-Template
| 57
| align="left" | 5'-<span style="color:red">ATT TAG GTG ACA CTA TAG AGG CGA</span> GCG TAA GTC AAT TCC ACT ATC ATT GCT GCA AGC-3'
|- align="center"
| '''G2''' Template
| 57
| align="left" | 5'-GCT TGC AGC AAT GAT AGT GGA ATT GAC TTA CGC <span style="color:red">TCG CCT CTA TAG TGT CAC CTA AAT</span>-3'
|- align="center"
| '''k1'''
| 100
| align="left" | 5'-TexRd-CGT CGC CTC TCA ACG AAC CTT ACG CAA TAT CAG AGA ATC CAC ACA AGC GTG TGG TGA GAG G-IowaBlack-3'
|- align="center"
| '''Spinach''' Non-Template
| 100
| align="left" | 5'-ATT TAG GTG ACA CTA TAG AGG ACG CGA CCG AAA TGG TGA AGG ACG GGT CCA GTG CTT CGG CAC TGT TGA GTA GAG TGT GAG CTC CGT AAC TGG TCG CGT C-3'
|- align="center"
| '''Spinach''' Template
| 100
| align="left" | 5'-GAC GCG ACC AGT TAC GGA GCT CAC ACT CTA CTC AAC AGT GCC GAA GCA CTG GAC CCG TCC TTC ACC ATT TCG GTC GCG TCC TCT ATA GTG TCA CCT AAA T-3'
|- align="center"
| '''Malachite Green''' Non-Template
| 68
| align="left" | 5'-ACT ATG ATA ATA CGA CTC ACT ATA GGG AGA GGA TCC CGA CTG GCG AGA GCC AGG TAA CGA ATG GAT CC-3'
|- align="center"
| '''Malachite Green''' Template
| 68
| align="left" | 5'-GGA TCC ATT CGT TAC CTG GCT CTC GCC AGT CGG GAT CCT CTC CCT ATA GTG AGT CGT ATT ATC ATA GT-3'
|}​
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Latest revision as of 15:45, 25 October 2014