Biomod/2013/NanoUANL/Reactor: Difference between revisions
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=== Introduction === | === Introduction === | ||
The CCMV capsid was considered as a continuous stirred-tank reactor with accumulation of the product. | The CCMV capsid was considered as a continuous stirred-tank reactor with accumulation of the product. This is a common ideal reactor type in chemical engineering. This is an open system that operates on a steady-state assumption, where the conditions of the reactor do not change with time. It is a complete opposite of tubular plug-flow and stirred batch reactors, and can be very useful when studying the behavior of a gas, liquid or solid. | ||
The reactor is modelled by that of a Continuous Ideally Stirre-Tank Reactor (CISTR), assuming perfect mixing in the container. | |||
====Enzymatic Reaction==== | |||
The general reaction scheme is as follows: | |||
<math>E + S \leftrightarrow ES \rightarrow E^0 + P</math> | <math>E + S \leftrightarrow ES \rightarrow E^0 + P</math> | ||
With a reaction rate of: | |||
<math>\frac{d[ES]}{dt}=k_1[E][S]-k_{-1}[ES]-k_2[ES]</math> | <math>\frac{d[ES]}{dt}=k_1[E][S]-k_{-1}[ES]-k_2[ES]</math> | ||
We established the following in our system: | This equation is affected by the constants k<sub>1</sub> , k<sub>-1</sub> and k<sub>2</sub>. | ||
====Considerations==== | |||
We established the following considerations in our system: | |||
*Uniform distribution throughout the reactor | *Uniform distribution throughout the reactor | ||
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*Tortuosity approaches zero during diffusion | *Tortuosity approaches zero during diffusion | ||
====Mass balance==== | |||
Mass balance was presented as such: | Mass balance was presented as such: | ||
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The intake and outflow flux were determined by diffusion , considering a spherical container. | The intake and outflow flux were determined by diffusion , considering a spherical container. | ||
[[Image:CCMV2.jpg]] | [[Image:CCMV2.jpg]thumb|right|Diagram of the container]] | ||
For the simplification of the diffusion phenomenon we considered: | For the simplification of the diffusion phenomenon we considered: |
Revision as of 11:56, 12 October 2013
What is a reactor?
Introduction
The CCMV capsid was considered as a continuous stirred-tank reactor with accumulation of the product. This is a common ideal reactor type in chemical engineering. This is an open system that operates on a steady-state assumption, where the conditions of the reactor do not change with time. It is a complete opposite of tubular plug-flow and stirred batch reactors, and can be very useful when studying the behavior of a gas, liquid or solid.
The reactor is modelled by that of a Continuous Ideally Stirre-Tank Reactor (CISTR), assuming perfect mixing in the container.
Enzymatic Reaction
The general reaction scheme is as follows:
[math]\displaystyle{ E + S \leftrightarrow ES \rightarrow E^0 + P }[/math]
With a reaction rate of:
[math]\displaystyle{ \frac{d[ES]}{dt}=k_1[E][S]-k_{-1}[ES]-k_2[ES] }[/math]
This equation is affected by the constants k1 , k-1 and k2.
Considerations
We established the following considerations in our system:
- Uniform distribution throughout the reactor
- K-1 >> K1 and K2
- One enzyme per reactor/VLP
- Tortuosity approaches zero during diffusion
Mass balance
Mass balance was presented as such:
INFLOW= OUTFLOW- DISAPPEARANCE BY REACTION + ACCUMULATION
where
Inflow= F0
Outflow= F0(1-XS)
Disappearance = V(-rS
Accumulation = [math]\displaystyle{ \tfrac{d[P]}{dt} }[/math]
F0 = F0(1-XS) - V(-rS) + [math]\displaystyle{ \tfrac{d[P]}{dt} }[/math]
The intake and outflow flux were determined by diffusion , considering a spherical container.
[[Image:CCMV2.jpg]thumb|right|Diagram of the container]]
For the simplification of the diffusion phenomenon we considered:
- Constant temperature
- Constant pressure
- Species B stays in a stationary state (it does not diffuse in A)
- The container (VLP) has a spherical shape
A mass balance, taking into account a spherical envelope leads to:
[math]\displaystyle{ \frac{d}{dr}(r^2N_{Ar})=0 }[/math]
where NAr represents molar flux. For NBr we obtain:
[math]\displaystyle{ \frac{d}{dr}(r^2\frac{cD_{AB}}{1-x_A}\frac{dx_A}{dr})=0 }[/math]
At a constant temperature the product (cDAB) is equally constant and xA=1-xB, the equation can be integrated into the following expression:
[math]\displaystyle{ F_A=4\pi r_1^2N_{Ar}|_{r=r1}= \frac{4\pi cD_{AB}}{1/r_1=1/r_2} \ln\frac{x_{B2}}{x_{B1}} }[/math]
where x are the fractions, c is the concentration and r are the respective radii.
This equation defines the nanoreactor inflow; a similar analysis yields the reactor outflow.
The ionic silver diffusion coefficient in function to the solution is described by Nerst's equation (1888)1:
[math]\displaystyle{ D_{AB}°= \frac{RT}{F^2} \frac{\lambda^o_+\lambda^o_-}{\lambda^o_++\lambda^o_-} \frac{|Z_-|+|Z_+|}{|Z_+Z_-|} }[/math]
where
- F = Faraday's constant
- DAB°=Diffusion coefficient at infinite dilution
- λ+°=Cationic conductivity at infinite dilution
- λ-°=Anionic conductivity at infinite dilution
- Z+=Cation valence
- Z-=Anionic valence
- T=Absolute temperature
Via Joback's method, we obtain the normal boiling temperature:
[math]\displaystyle{ T_b=\mathbf{198} + \sum_{k} N_k(tbk) }[/math]
in which Nk is the number of times that the contribution occurs in the compound.
Using a similar approach, also by Joback, we estimated the critical temperature:
[math]\displaystyle{ T_c=T_b\Bigg[ \mathbf{0.584}+\mathbf{0.965} \bigg\{\sum_{k} N_k(tck) \bigg\} - \bigg\{\sum_{k} N_k(tck) \bigg\}^2 \Bigg]^{-1} }[/math]
Joback Method Contributions (C1 Prausnitz)
[TABLA]
Conductivity was determined by the Sastri method:
[math]\displaystyle{ \lambda_L=\lambda_ba^m }[/math]
where λL = thermic conductivity of the liquid [ W/(m·K)] λb = thermic conductivity at normal boiling point Tbr= T/Tc = reduced temperature Tc = critical temperature, K
[math]\displaystyle{ m=1-\bigg(\frac{1-T_r}{1-T_{br}}\bigg)^n }[/math]
a=0.16 n=0.2
Contribución de Sastri (Tabla 10.5. Prausnitz 5a)
[TABLA]
Silver density
{pendiente}