Biomod/2013/Aarhus/Nano Creators/Testing: Difference between revisions

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Revision as of 07:06, 20 October 2013

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.fancybox-nav").remove()); b.unbindEvents();e=a.content;c=a.type;l=a.scrolling;f.extend(b,{wrap:a.wrap,skin:a.skin,outer:a.outer,inner:a.inner,current:a,previous:d});g=a.href;switch(c){case "inline":case "ajax":case "html":a.selector?e=f("<div>").html(e).find(a.selector):u(e)&&(e.data("fancybox-placeholder")||e.data("fancybox-placeholder",f('<div class="fancybox-placeholder"></div>').insertAfter(e).hide()),e=e.show().detach(),a.wrap.bind("onReset",function(){f(this).find(e).length&&e.hide().replaceAll(e.data("fancybox-placeholder")).data("fancybox-placeholder", !1)}));break;case "image":e=a.tpl.image.replace(/\{href\}/g,g);break;case "swf":e='<object id="fancybox-swf" classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" width="100%" height="100%"><param name="movie" value="'+g+'"></param>',h="",f.each(a.swf,function(a,b){e+='<param name="'+a+'" value="'+b+'"></param>';h+=" "+a+'="'+b+'"'}),e+='<embed src="'+g+'" type="application/x-shockwave-flash" width="100%" 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q=h.maxHeight,t=h.scrolling,r=h.scrollOutside?h.scrollbarWidth:0,y=h.margin,z=m(y[1]+y[3]),s=m(y[0]+y[2]),w,A,u,D,B,G,C,E,I;e.add(l).add(g).width("auto").height("auto").removeClass("fancybox-tmp");y=m(l.outerWidth(!0)-l.width());w=m(l.outerHeight(!0)-l.height());A=z+y;u=s+w;D=F(c)?(a.w-A)*m(c)/100:c;B=F(k)?(a.h-u)*m(k)/100:k;if("iframe"===h.type){if(I=h.content,h.autoHeight&&1===I.data("ready"))try{I[0].contentWindow.document.location&&(g.width(D).height(9999),G=I.contents().find("body"),r&&G.css("overflow-x", "hidden"),B=G.outerHeight(!0))}catch(H){}}else 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c+y+r<A&&(c+=r);g.width(c).height(k);e.width(c+y);a=e.width();z=e.height();e=(a>A||z>s)&&c>n&&k>v;c=h.aspectRatio?c<G&&k<C&&c<D&&k<B:(c<G||k<C)&&(c<D||k<B);f.extend(h,{dim:{width:x(a),height:x(z)},origWidth:D,origHeight:B,canShrink:e,canExpand:c,wPadding:y,hPadding:w,wrapSpace:z-l.outerHeight(!0),skinSpace:l.height()-k});!I&&h.autoHeight&&k>v&&k<q&&!c&&g.height("auto")},_getPosition:function(a){var d=b.current,e=b.getViewport(),c=d.margin,f=b.wrap.width()+c[1]+c[3],g=b.wrap.height()+c[0]+c[2],c={position:"absolute", top:c[0],left:c[3]};d.autoCenter&&d.fixed&&!a&&g<=e.h&&f<=e.w?c.position="fixed":d.locked||(c.top+=e.y,c.left+=e.x);c.top=x(Math.max(c.top,c.top+(e.h-g)*d.topRatio));c.left=x(Math.max(c.left,c.left+(e.w-f)*d.leftRatio));return c},_afterZoomIn:function(){var a=b.current;a&&((b.isOpen=b.isOpened=!0,b.wrap.css("overflow","visible").addClass("fancybox-opened"),b.update(),(a.closeClick||a.nextClick&&1<b.group.length)&&b.inner.css("cursor","pointer").bind("click.fb",function(d){f(d.target).is("a")||f(d.target).parent().is("a")|| (d.preventDefault(),b[a.closeClick?"close":"next"]())}),a.closeBtn&&f(a.tpl.closeBtn).appendTo(b.skin).bind("click.fb",function(a){a.preventDefault();b.close()}),a.arrows&&1<b.group.length&&((a.loop||0<a.index)&&f(a.tpl.prev).appendTo(b.outer).bind("click.fb",b.prev),(a.loop||a.index<b.group.length-1)&&f(a.tpl.next).appendTo(b.outer).bind("click.fb",b.next)),b.trigger("afterShow"),a.loop||a.index!==a.group.length-1)?b.opts.autoPlay&&!b.player.isActive&&(b.opts.autoPlay=!1,b.play(!0)):b.play(!1))}, _afterZoomOut:function(a){a=a||b.current;f(".fancybox-wrap").trigger("onReset").remove();f.extend(b,{group:{},opts:{},router:!1,current:null,isActive:!1,isOpened:!1,isOpen:!1,isClosing:!1,wrap:null,skin:null,outer:null,inner:null});b.trigger("afterClose",a)}});b.transitions={getOrigPosition:function(){var a=b.current,d=a.element,e=a.orig,c={},f=50,g=50,h=a.hPadding,k=a.wPadding,n=b.getViewport();!e&&a.isDom&&d.is(":visible")&&(e=d.find("img:first"),e.length||(e=d));u(e)?(c=e.offset(),e.is("img")&& (f=e.outerWidth(),g=e.outerHeight())):(c.top=n.y+(n.h-g)*a.topRatio,c.left=n.x+(n.w-f)*a.leftRatio);if("fixed"===b.wrap.css("position")||a.locked)c.top-=n.y,c.left-=n.x;return c={top:x(c.top-h*a.topRatio),left:x(c.left-k*a.leftRatio),width:x(f+k),height:x(g+h)}},step:function(a,d){var e,c,f=d.prop;c=b.current;var g=c.wrapSpace,h=c.skinSpace;if("width"===f||"height"===f)e=d.end===d.start?1:(a-d.start)/(d.end-d.start),b.isClosing&&(e=1-e),c="width"===f?c.wPadding:c.hPadding,c=a-c,b.skin[f](m("width"=== f?c:c-g*e)),b.inner[f](m("width"===f?c:c-g*e-h*e))},zoomIn:function(){var a=b.current,d=a.pos,e=a.openEffect,c="elastic"===e,l=f.extend({opacity:1},d);delete l.position;c?(d=this.getOrigPosition(),a.openOpacity&&(d.opacity=0.1)):"fade"===e&&(d.opacity=0.1);b.wrap.css(d).animate(l,{duration:"none"===e?0:a.openSpeed,easing:a.openEasing,step:c?this.step:null,complete:b._afterZoomIn})},zoomOut:function(){var a=b.current,d=a.closeEffect,e="elastic"===d,c={opacity:0.1};e&&(c=this.getOrigPosition(),a.closeOpacity&& (c.opacity=0.1));b.wrap.animate(c,{duration:"none"===d?0:a.closeSpeed,easing:a.closeEasing,step:e?this.step:null,complete:b._afterZoomOut})},changeIn:function(){var a=b.current,d=a.nextEffect,e=a.pos,c={opacity:1},f=b.direction,g;e.opacity=0.1;"elastic"===d&&(g="down"===f||"up"===f?"top":"left","down"===f||"right"===f?(e[g]=x(m(e[g])-200),c[g]="+=200px"):(e[g]=x(m(e[g])+200),c[g]="-=200px"));"none"===d?b._afterZoomIn():b.wrap.css(e).animate(c,{duration:a.nextSpeed,easing:a.nextEasing,complete:b._afterZoomIn})}, changeOut:function(){var a=b.previous,d=a.prevEffect,e={opacity:0.1},c=b.direction;"elastic"===d&&(e["down"===c||"up"===c?"top":"left"]=("up"===c||"left"===c?"-":"+")+"=200px");a.wrap.animate(e,{duration:"none"===d?0:a.prevSpeed,easing:a.prevEasing,complete:function(){f(this).trigger("onReset").remove()}})}};b.helpers.overlay={defaults:{closeClick:!0,speedOut:200,showEarly:!0,css:{},locked:!t,fixed:!0},overlay:null,fixed:!1,el:f("html"),create:function(a){var d;a=f.extend({},this.defaults,a);this.overlay&& this.close();d=b.coming?b.coming.parent:a.parent;this.overlay=f('<div class="fancybox-overlay"></div>').appendTo(d&&d.lenth?d:"body");this.fixed=!1;a.fixed&&b.defaults.fixed&&(this.overlay.addClass("fancybox-overlay-fixed"),this.fixed=!0)},open:function(a){var d=this;a=f.extend({},this.defaults,a);this.overlay?this.overlay.unbind(".overlay").width("auto").height("auto"):this.create(a);this.fixed||(q.bind("resize.overlay",f.proxy(this.update,this)),this.update());a.closeClick&&this.overlay.bind("click.overlay", function(a){if(f(a.target).hasClass("fancybox-overlay"))return b.isActive?b.close():d.close(),!1});this.overlay.css(a.css).show()},close:function(){q.unbind("resize.overlay");this.el.hasClass("fancybox-lock")&&(f(".fancybox-margin").removeClass("fancybox-margin"),this.el.removeClass("fancybox-lock"),q.scrollTop(this.scrollV).scrollLeft(this.scrollH));f(".fancybox-overlay").remove().hide();f.extend(this,{overlay:null,fixed:!1})},update:function(){var a="100%",b;this.overlay.width(a).height("100%"); J?(b=Math.max(H.documentElement.offsetWidth,H.body.offsetWidth),p.width()>b&&(a=p.width())):p.width()>q.width()&&(a=p.width());this.overlay.width(a).height(p.height())},onReady:function(a,b){var e=this.overlay;f(".fancybox-overlay").stop(!0,!0);e||this.create(a);a.locked&&this.fixed&&b.fixed&&(b.locked=this.overlay.append(b.wrap),b.fixed=!1);!0===a.showEarly&&this.beforeShow.apply(this,arguments)},beforeShow:function(a,b){b.locked&&!this.el.hasClass("fancybox-lock")&&(!1!==this.fixPosition&&f("*").filter(function(){return"fixed"=== f(this).css("position")&&!f(this).hasClass("fancybox-overlay")&&!f(this).hasClass("fancybox-wrap")}).addClass("fancybox-margin"),this.el.addClass("fancybox-margin"),this.scrollV=q.scrollTop(),this.scrollH=q.scrollLeft(),this.el.addClass("fancybox-lock"),q.scrollTop(this.scrollV).scrollLeft(this.scrollH));this.open(a)},onUpdate:function(){this.fixed||this.update()},afterClose:function(a){this.overlay&&!b.coming&&this.overlay.fadeOut(a.speedOut,f.proxy(this.close,this))}};b.helpers.title={defaults:{type:"float", position:"bottom"},beforeShow:function(a){var d=b.current,e=d.title,c=a.type;f.isFunction(e)&&(e=e.call(d.element,d));if(r(e)&&""!==f.trim(e)){d=f('<div class="fancybox-title fancybox-title-'+c+'-wrap">'+e+"</div>");switch(c){case "inside":c=b.skin;break;case "outside":c=b.wrap;break;case "over":c=b.inner;break;default:c=b.skin,d.appendTo("body"),J&&d.width(d.width()),d.wrapInner('<span class="child"></span>'),b.current.margin[2]+=Math.abs(m(d.css("margin-bottom")))}d["top"===a.position?"prependTo": "appendTo"](c)}}};f.fn.fancybox=function(a){var d,e=f(this),c=this.selector||"",l=function(g){var h=f(this).blur(),k=d,l,m;g.ctrlKey||g.altKey||g.shiftKey||g.metaKey||h.is(".fancybox-wrap")||(l=a.groupAttr||"data-fancybox-group",m=h.attr(l),m||(l="rel",m=h.get(0)[l]),m&&""!==m&&"nofollow"!==m&&(h=c.length?f(c):e,h=h.filter("["+l+'="'+m+'"]'),k=h.index(this)),a.index=k,!1!==b.open(h,a)&&g.preventDefault())};a=a||{};d=a.index||0;c&&!1!==a.live?p.undelegate(c,"click.fb-start").delegate(c+":not('.fancybox-item, .fancybox-nav')", "click.fb-start",l):e.unbind("click.fb-start").bind("click.fb-start",l);this.filter("[data-fancybox-start=1]").trigger("click");return this};p.ready(function(){var a,d;f.scrollbarWidth===w&&(f.scrollbarWidth=function(){var a=f('<div style="width:50px;height:50px;overflow:auto"><div/></div>').appendTo("body"),b=a.children(),b=b.innerWidth()-b.height(99).innerWidth();a.remove();return b});f.support.fixedPosition===w&&(f.support.fixedPosition=function(){var a=f('<div style="position:fixed;top:20px;"></div>').appendTo("body"), b=20===a[0].offsetTop||15===a[0].offsetTop;a.remove();return b}());f.extend(b.defaults,{scrollbarWidth:f.scrollbarWidth(),fixed:f.support.fixedPosition,parent:f("body")});a=f(s).width();K.addClass("fancybox-lock-test");d=f(s).width();K.removeClass("fancybox-lock-test");f("<style type='text/css'>.fancybox-margin{margin-right:"+(d-a)+"px !important;}</style>").appendTo("head")})})(window,document,jQuery); </script>

<script src="http://fancyapps.com/fancybox/source/jquery.fancybox.pack.js?v=2.1.5"></script>

<!-- Optionally add helpers - button, thumbnail and/or media --> <link rel="stylesheet" href="http://fancyapps.com/fancybox/source/helpers/jquery.fancybox-buttons.css?v=1.0.5" type="text/css" media="screen" /> <script src="http://fancyapps.com/fancybox/source/helpers/jquery.fancybox-buttons.js?v=1.0.5"></script> <script src="http://fancyapps.com/fancybox/source/helpers/jquery.fancybox-media.js?v=1.0.6"></script>

<link rel="stylesheet" href="http://fancyapps.com/fancybox/source/helpers/jquery.fancybox-thumbs.css?v=1.0.7" type="text/css" media="screen" /> <script> 

/*!
* Thumbnail helper for fancyBox
* version: 1.0.7 (Mon, 01 Oct 2012)
* @requires fancyBox v2.0 or later
*
* Usage:
*     $(".fancybox").fancybox({
*         helpers : {
*             thumbs: {
*                 width  : 50,
*                 height : 50
*             }
*         }
*     });
*
*/
(function ($) {

//Shortcut for fancyBox object var F = $.fancybox;

//Add helper object F.helpers.thumbs = { defaults : { width  : 50, // thumbnail width height  : 50, // thumbnail height position : 'bottom', // 'top' or 'bottom' source  : function ( item ) { // function to obtain the URL of the thumbnail image var href;

if (item.element) { href = $(item.element).find('img').attr('src'); }

if (!href && item.type === 'image' && item.href) { href = item.href; }

return href; } },

wrap  : null, list  : null, width : 0,

init: function (opts, obj) { var that = this, list, thumbWidth = opts.width, thumbHeight = opts.height, thumbSource = opts.source;

//Build list structure list = '';

for (var n = 0; n < obj.group.length; n++) { list += '<li><a style="width:' + thumbWidth + 'px;height:' + thumbHeight + 'px;" href="javascript:jQuery.fancybox.jumpto(' + n + ');"></a></li>'; }

this.wrap = $('<div id="fancybox-thumbs"></div>').addClass(opts.position).appendTo('body'); this.list = $('<ul>' + list + '</ul>').appendTo(this.wrap);

//Load each thumbnail $.each(obj.group, function (i) { var href = thumbSource( obj.group[ i ] );

if (!href) { return; }

$("<img />").load(function () { var width = this.width, height = this.height, widthRatio, heightRatio, parent;

if (!that.list || !width || !height) { return; }

//Calculate thumbnail width/height and center it widthRatio = width / thumbWidth; heightRatio = height / thumbHeight;

parent = that.list.children().eq(i).find('a');

if (widthRatio >= 1 && heightRatio >= 1) { if (widthRatio > heightRatio) { width = Math.floor(width / heightRatio); height = thumbHeight;

} else { width = thumbWidth; height = Math.floor(height / widthRatio); } }

$(this).css({ width  : width, height : height, top  : Math.floor(thumbHeight / 2 - height / 2), left  : Math.floor(thumbWidth / 2 - width / 2) });

parent.width(thumbWidth).height(thumbHeight);

$(this).hide().appendTo(parent).fadeIn(300);

}).attr('src', href); });

//Set initial width this.width = this.list.children().eq(0).outerWidth(true);

this.list.width(this.width * (obj.group.length + 1)).css('left', Math.floor($(window).width() * 0.5 - (obj.index * this.width + this.width * 0.5))); },

beforeLoad: function (opts, obj) { //Remove self if gallery do not have at least two items if (obj.group.length < 2) { obj.helpers.thumbs = false;

return; }

//Increase bottom margin to give space for thumbs obj.margin[ opts.position === 'top' ? 0 : 2 ] += ((opts.height) + 15); },

afterShow: function (opts, obj) { //Check if exists and create or update list if (this.list) { this.onUpdate(opts, obj);

} else { this.init(opts, obj); }

//Set active element this.list.children().removeClass('active').eq(obj.index).addClass('active'); },

//Center list onUpdate: function (opts, obj) { if (this.list) { this.list.stop(true).animate({ 'left': Math.floor($(window).width() * 0.5 - (obj.index * this.width + this.width * 0.5)) }, 150); } },

beforeClose: function () { if (this.wrap) { this.wrap.remove(); }

this.wrap = null; this.list = null; this.width = 0; } }

}(jQuery)); </script> <script > $(document).ready(function() { alert("wee"); $(".image").fancybox(); }); </script> </html>

Lorem ipsum

Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent luptatum zzril delenit augue duis dolore te feugait nulla facilisi. Nam liber tempor cum soluta nobis eleifend option congue nihil imperdiet doming id quod mazim placerat facer possim assum. Typi non habent claritatem insitam; est usus legentis in iis qui facit eorum claritatem. Investigationes demonstraverunt lectores legere me lius quod ii legunt saepius. Claritas est etiam processus dynamicus, qui sequitur mutationem consuetudium lectorum.

His ex tritani alienum

His ex tritani alienum, mea ei etiam phaedrum. Ne mea epicurei gubergren liberavisse, stet omnesque cotidieque no has. Cu sit solum recusabo reprehendunt, dicam utroque apeirian id duo. Et ceteros invenire sensibus pri. Eam perpetua facilisis dissentiunt cu, eum quando verear at. Ea qui veniam dolorem, praesent sadipscing ei sea.


Setup

His ex tritani alienum, mea ei etiam phaedrum. Ne mea epicurei gubergren liberavisse, stet omnesque cotidieque no has. Cu sit solum recusabo reprehendunt, dicam utroque apeirian id duo. Et ceteros invenire sensibus pri. Eam perpetua facilisis dissentiunt cu, eum quando verear at. Ea qui veniam dolorem, praesent sadipscing ei sea.

Setup2

His ex tritani alienum, mea ei etiam phaedrum. Ne mea epicurei gubergren liberavisse, stet omnesque cotidieque no has. Cu sit solum recusabo reprehendunt, dicam utroque apeirian id duo. Et ceteros invenire sensibus pri. Eam perpetua facilisis dissentiunt cu, eum quando verear at. Ea qui veniam dolorem, praesent sadipscing ei sea.

Fancy table

Header text Header text Header text!
Example Example Example
Example Example Example
Example Example Example

Image

asdfasfg
The 3D illustrations of the plate in solution from different viewpoints predicted by CanDo.

LaTeX

[math]\displaystyle{ \forall v \in V : \left( r_i \vee g_i \vee b_i \right) \wedge \forall \left( v_i, v_j \right) \in E : \left( \neg r_i \vee \neg r_j \right) \wedge \left( \neg g_i \vee \neg g_j \right) \wedge \left( \neg b_i \vee \neg b_j \right) }[/math]

\begin{tabular}{ l c r } 

 1 & 2 & 3 \\
 4 & 5 & 6 \\
 7 & 8 & 9 \\

\end{tabular}

<html></div></div></html> <html> <head> <style>

  1. indexing {

/* float: left; position: center; */ background-color: #222; border-top: 2px solid #d13f31; color: #006e9c; margin: 0px; padding: 0px 0px 10px 0px; width: 100%; text-align: center; }

.footer-section { padding: 10px; display: table-cell; text-align: left; }

.footer-section-title { font-size: 20px; }

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</style> </head> <body> <div id="indexing"> <div id="sitemap"> <p id="sitemapTitle">SITEMAP | BIOMOD 2013 NANO CREATORS | Aarhus University</p> <div id="footer-contents"> <div class="footer-section"> <p class="footer-section-title">INTRODUCTION</p> <ul> <li><a href="/wiki/Biomod/2013/Aarhus">Home, abstract, animation and video</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Introduction">Introduction</a></li </ul> </div> <div class="footer-section"> <p class="footer-section-title">RESULTS AND DISCUSSION</p> <ul> <li><a href="/wiki/Biomod/2013/Aarhus/Results_And_Discussion/Origami">Origami</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Results_And_Discussion/Peptide_lock">Peptide lock</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Results_And_Discussion/Chemical_Modification">Chemical modification</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Results_And_Discussion/sisiRNA">sisiRNA</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Results_And_Discussion/System_In_Action">System in action</a></li> </ul> </div> <div class="footer-section"> <p class="footer-section-title">MATERIALS AND METHODS</p> <ul> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/Origami">Origami</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/Peptide_lock">Peptide lock</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/Chemical_Modification">Chemical modification</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/sisiRNA">sisiRNA</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/System_In_Action">System in action</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Materials_And_Methods/Methods">Methods</a></li> </ul> </div> <div class="footer-section"> <p class="footer-section-title">SUPPLEMENTARY</p> <ul> <li><a href="/wiki/Biomod/2013/Aarhus/Supplementary/Team_And_Acknowledgments">Team and acknowledgments</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Supplementary/Optimizations">Optimizations</a></li> <li><a href="/wiki/Biomod/2013/Aarhus/Supplementary/Supplementary_Data">Supplementary data</a></li> 

                                               <li><a

href="/wiki/Biomod/2013/Aarhus/Supplementary/Supplementary_Informations">Supplementary informations</a> <li><a href="/wiki/Biomod/2013/Aarhus/Supplementary/References">References</a></li> </ul> </div> </div> <div> <p id="copyright">Copyright (C) 2013 | BIOMOD Team Nano Creators @ Aarhus University | Programming by: <a href="mailto:pvskaarup@gmail.com?Subject=BIOMOD 2013:">Peter Vium Skaarup</a>.</p> </div> </div>

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