Biomod/2012/UT/Nanowranglers/References

From OpenWetWare
Jump to navigationJump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

<html> <style type="text/css"> //<!--

//Get the playbill font by Hank Gillette, 1992, public domain @font-face { 

 font-family: Playbill2;  
 src: url( 'http://openwetware.org/images/e/e6/PLAYBILL.eot' ); /* IE */  
 src: local(Playbill), 
      url( 'http://openwetware.org/images/a/a1/PLAYBILL.TTF' ) format('truetype'),
      url( 'http://openwetware.org/images/b/ba/PLAYBILL.svg#font' ) format('svg'); /* non-IE */

} /* Define the background of the whole page */ @media screen { 

   body { background: #c5d0ea 0 0 no-repeat; }

} /* Define the div holding the page contents */

  1. globalWrapper{
 left: 50%;
 height: 100%;
 background-color: #FFFFFF;
 width: 900px;
 margin-left: -450px; /* Should be width / 2 */
 margin-top: 0px;
 margin-bottom: 0px;
 margin-right: 0px;
 padding: 0 0 0 0;   
 position: absolute;

} .toc{ 

 display:none;

} /* Hide the page heading at top */ .firstHeading {display:none;} /* Hide the bar at the left */

  1. column-one {display:none;}

/* Define the div holding the page contents (this div is inside globalWrapper. We override its default margins) */

  1. content{
 margin: 0 0 0 0;
 font: normal 100% sans-serif;
 color: #000033;
 padding: 12px 12px 12px 12px;
 background-image: url(http://openwetware.org/images/3/38/FortDavis-Pano-Cropped.jpg); background-repeat: no-repeat; 
 border: 0;

} /* Miscellaneous stuff. Feel free to add style definitions. */ h3 { 

 /*
 color: #CC5500;
 font: normal 3em sans-serif;
 letter-spacing: 1px; 
 margin-bottom: 0; 
 */
 color: #000000;
 font-style: normal;
 font-size: 39px;
 font-family: 'Playbill2', 'Playbill', sans-serif;
 //font-stretch: ultra-expanded;
 letter-spacing: 1px; 
 margin-bottom: -10px;
 line-height: 25px;
 padding-bottom: 0px;

} h2 { 

 color: #000000;
 font-style: normal;
 font-size: 39px;
 font-family: 'Playbill2', 'Playbill', sans-serif;
 //font-stretch: ultra-expanded;
 letter-spacing: 1px; 
 margin-bottom: -10px;
 line-height: 25px;
 padding-bottom: 0px;

} h1 { 

 /*
 color: #CC5500;
 font: normal 3em sans-serif;
 letter-spacing: 1px; 
 margin-bottom: 0; 
 */
 color: #000000;
 font-style: normal;
 font-size: 39px;
 font-family: 'Playbill2', 'Playbill', sans-serif;
 //font-stretch: ultra-expanded;
 letter-spacing: 1px; 
 margin-bottom: -10px;
 line-height: 25px;
 padding-bottom: 0px;

}

.scriptFont { 

  color: #0;
  padding-top: 5px;
  font: normal 1em Georgia;

}

/* Code taken from publicly available css tutorials at onderhond.com */ .linkconcept a {background:url("http://openwetware.org/images/0/03/Concept-bright.png") left top no-repeat;} .linkmembers a {background:url("http://openwetware.org/images/2/24/Members-bright.png") left top no-repeat;} .linkresults a {background:url("http://openwetware.org/images/a/ac/Results-bright.png") left top no-repeat;} .linkmethods a {background:url("http://openwetware.org/images/0/02/Methods-bright.png") left top no-repeat;} .linkrefs a {background:url("http://openwetware.org/images/2/28/References-bright.png") left top no-repeat;}

.linkgeneral {float:left; padding-right:3px; } .linkgeneral a {display:block; width:141px; height:52px;} .linkgeneral a:hover img {position:absolute; left:-999em; top:-999em;} .linkgeneral a:hover {zoom:1;} //--> </style> <div style="text-align:center" /> <img src="http://openwetware.org/images/5/59/NanoWranglers.png"/><br /> <div class="scriptFont"> Undergraduate DNA nanotechnology research group from the University of Texas at Austin </div> <img src="http://openwetware.org/images/e/e6/NanoWranglersDNAStripe.png"/><br /> <!-- links at top --> <div style="float:left; width:85px; height:52px; display:block" > </div> <div class="linkconcept linkgeneral"> 

 <a href="http://openwetware.org/wiki/Biomod/2012/UT/Nanowranglers"><img src="http://openwetware.org/images/c/ce/Concept-dull.png" alt="" /></a>

</div> <div class="linkmethods linkgeneral"> 

 <a href="http://openwetware.org/wiki/Biomod/2012/UT/Nanowranglers/Methods"><img src="http://openwetware.org/images/b/be/Methods-dull.png" alt="" /></a>

</div> <div class="linkresults linkgeneral"> 

 <a href="http://openwetware.org/wiki/Biomod/2012/UT/Nanowranglers/Results"><img src="http://openwetware.org/images/8/8f/Results-dull.png" alt="" /></a>

</div> <div class="linkmembers linkgeneral"> 

 <a href="http://openwetware.org/wiki/Biomod/2012/UT/Nanowranglers/Members"><img src="http://openwetware.org/images/4/47/Members-dull.png" alt="" /></a>

</div> <div class="linkrefs linkgeneral"> 

 <a href="http://openwetware.org/wiki/Biomod/2012/UT/Nanowranglers/References"><img src="http://openwetware.org/images/4/49/References-dull.png" alt="" /></a>

</div> <div style="clear: both;" ></div> <img src="http://openwetware.org/images/e/e6/NanoWranglersDNAStripe.png"/><br />

</div> </html>

Please fill out references

  1. Barish, R. D., Rothemund, P. W. K., & Winfree, E. (2005). Two computational primitives for algorithmic self-assembly: copying and counting. Nano letters, 5(12), 2586–92. doi:10.1021/nl052038l
  2. Brun, Y. (2008). Solving NP-complete problems in the tile assembly model. Theoretical Computer Science, 395(1), 31–46. doi:10.1016/j.tcs.2007.07.052
  3. Chen, X., & Ellington, A. D. (2010). Shaping up nucleic acid computation. Current opinion in biotechnology, 21(4), 392–400. doi:10.1016/j.copbio.2010.05.003
  4. Dietz, H., Douglas, S. M., & Shih, W. M. (2009). Folding DNA into Twisted and Curved Nanoscale Shapes. Science, 325(5941), 725.
  5. Ding, B., Deng, Z., Yan, H., Cabrini, S., Zuckermann, R. N., & Bokor, J. (2010). Gold nanoparticle self-similar chain structure organized by DNA origami. Journal of the American Chemical Society, 132(10), 3248–9. doi:10.1021/ja9101198
  6. Douglas, S. M., Bachelet, I., & Church, G. M. (2012a). A logic-gated nanorobot for targeted transport of molecular payloads. Science (New York, N.Y.), 335(6070), 831–4. doi:10.1126/science.1214081
  7. Glotzer, S. C. (2004). Self-Assembly of Patchy Particles. Nano Letters, 4(8), 1407–1413. doi:10.1021/nl0493500
  8. He, Y., & Liu, D. R. (2010). Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nature nanotechnology, 5(11), 778–82. doi:10.1038/nnano.2010.190
  9. Li, B., Ellington, A. D., & Chen, X. (2011). Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic acids research, 39(16), e110. doi:10.1093/nar/gkr504
  10. Liu, C., Jonoska, N., & Seeman, N. C. (2009). Reciprocal DNA nanomechanical devices controlled by the same set strands. Nano Lett, 9(7), 2641–47. doi: 10.1021/nl901008k
  11. Liu, H., Chen, Y., He, Y., Ribbe, A. E., & Mao, C. (2006a). Approaching The Limit: Can One DNA Oligonucleotide Assemble into Large Nanostructures? Angewandte Chemie, 118(12), 1976–1979. doi:10.1002/ange.200504022
  12. Liu, H., Chen, Y., He, Y., Ribbe, A. E., & Mao, C. (2006b). Approaching the limit: can one DNA oligonucleotide assemble into large nanostructures? Angewandte Chemie (International ed. in English), 45(12), 1942–5. doi:10.1002/anie.200504022
  13. Lu, Y., & Liu, J. (2006). Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers. Current opinion in biotechnology, 17(6), 580–8. doi:10.1016/j.copbio.2006.10.004
  14. Lund, K., Manzo, A. J., Dabby, N., Michelotti, N., Johnson-Buck, A., Nangreave, J., Taylor, S., et al. (2010). Molecular robots guided by prescriptive landscapes. Nature, 465(7295), 206–10. doi:10.1038/nature09012
  15. Macfarlane, R. J., Lee, B., Jones, M. R., Harris, N., Schatz, G. C., & Mirkin, C. a. (2011a). Nanoparticle superlattice engineering with DNA. Science (New York, N.Y.), 334(6053), 204–8. doi:10.1126/science.1210493
  16. Mao, C., Sun, W., Shen, Z., & Seeman, N. C. (1999). A nanomechanical device based on the B-Z transition of DNA. Nature, 397(6715), 144–6. doi:10.1038/16437
  17. McNaughton, B. R., Cronican, J. J., Thompson, D. B., & Liu, D. R. (2009). Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins. Proceedings of the National Academy of Sciences of the United States of America, 106(15), 6111–6. doi:10.1073/pnas.0807883106
  18. Mirkin, C. A. (2000). from Recipient of ACS Award in Pure, 2258–2272
  19. Omabegho, T., Sha, R., & Seeman, N. C. (2009). A bipedal DNA Brownian motor with coordinated legs. Science (New York, N.Y.), 324(5923), 67–71. doi:10.1126/science.1170336
  20. Peng, X., Chen, H., Draney, D. R., Volcheck, W., Schutz-Geschwender, A., & Olive, D. M. (2009). A nonfluorescent, broad-range quencher dye for Förster resonance energy transfer assays. Analytical biochemistry, 388(2), 220–8. doi:10.1016/j.ab.2009.02.024
  21. Wendt, T. G., Volkmann, N., Skiniotis, G., Goldie, K. N., Müller, J., Mandelkow, E., & Hoenger, A. (2002). Microscopic evidence for a minus-end-directed power stroke in the kinesin motor ncd. The EMBO journal, 21(22), 5969–78. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=137211&tool=pmcentrez&rendertype=abstract
  22. Woo, S., & Rothemund, P. W. K. (2011). Programmable molecular recognition based on the geometry of DNA nanostructures. Nature chemistry, 3(8), 620–7. doi:10.1038/nchem.1070
  23. Yin, P., Choi, H. M. T., Calvert, C. R., & Pierce, N. a. (2008). Programming biomolecular self-assembly pathways. Nature, 451(7176), 318–22. doi:10.1038/nature06451
  24. Yurke, B., Turber, A. J., Jr, A. P. M., Simmel, F. C., & Neumann, J. L. (2000). A DNA-fuelled molecular machine made of DNA, 406(August), 605–608
  25. Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. Journal of the American Chemical Society, 131(47), 17303–14. doi:10.1021/ja906987s
Retrieved from "https://openwetware.org/mediawiki/index.php?title=Biomod/2012/UT/Nanowranglers/References&oldid=638311"