Biomod/2011/TUM/TNT/Methods/TEM: Difference between revisions

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Transmission electron microscopy (TEM) is an imaging technique to observe thin specimen. An electron beam interacts with the specimen while passing and is detected by a sensor, in this case a CCD camera. <br>
Transmission electron microscopy (TEM) is an imaging technique to observe thin specimen. An electron beam interacts with the specimen while passing and is detected by a sensor, in this case a CCD camera. <br>
DNA consists of atoms with small atomic numbers. This leads to only weak contrast. For fixation of the samples on to enhance the contrast, uranyl formiate is applied as negative stain.  
DNA consists of atoms with small atomic numbers. This leads to only weak contrast. For fixation on the samples to enhance the contrast, uranyl formiate is applied as negative stain.  
As DNA is light material the samples were stained with uranyl acetate to enhance contrast. Electrons can pass through the origami-structure and are absorbed or scattered by the stain. [http://openwetware.org/wiki/Biomod/2011/TUM/TNT/LabbookA/Preparing_samples_for_transmission_electron_microscope Read more about preparing samples for transmission electron microscope.]<br>
As DNA is light material, the samples were stained with uranyl acetate to enhance contrast. Electrons can pass through the origami-structure and are absorbed or scattered by the stain. [http://openwetware.org/wiki/Biomod/2011/TUM/TNT/LabbookA/Preparing_samples_for_transmission_electron_microscope Read more about preparing samples for transmission electron microscope.]<br>
The images taken for this project were made at the BioNano TEM facility (CM 100, Philips, Amsterdam, NL) at a high voltage of 100.0 kV and a nominal magnification of 28500.
The images taken for this project were made at the BioNano TEM facility (CM 100, Philips, Amsterdam, NL) at a high voltage of 100.0 kV and a nominal magnification of 28500.



Revision as of 10:46, 29 October 2011

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