Biomod/2011/Harvard/HarvarDNAnos:Resources: Difference between revisions
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=Literature= | =Literature= | ||
==Origami container design== | ==Origami container design== | ||
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*include Rothemund paper on hybridizing AuNPs | *include Rothemund paper on hybridizing AuNPs | ||
== | ==Origami Applications== | ||
*[http://www.fiercebiotech.com/press-releases/dna-cages-can-survive-inside-living-cells About introducing origami to cells] | *[http://www.fiercebiotech.com/press-releases/dna-cages-can-survive-inside-living-cells About introducing origami to cells] | ||
Revision as of 19:28, 28 October 2011
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<html><center><a href='http://openwetware.org/wiki/Biomod/2011/Harvard/HarvarDNAnos'><img src=http://openwetware.org/images/1/1c/Hdnaheader.jpg width=800px></a></center></html>
Applications & Tools
- SphereCAD
- caDNAno
- CanDo
- Maya 3D Design
- Adobe Illustrator
- Adobe Photoshop
- Nucleic Acid Sequence Massager
- J5 Vector Editor
- NuPack
- WolframAlpha
- XPS 2 PDF
- Microsoft Excel
- Shawn Douglas' Excel-to-Wiki Converter
Support
Literature
Origami container design
- First paper on a DNA origami box: http://www.nature.com/nature/journal/v459/n7243/full/nature07971.html
- But with caDNAno and multi-layer origami as a design paradigm, the strategy for making boxes becomes very different
- Han et al. Science paper: "DNA Origami with Complex Curvatures in Three-Dimensional Space"
Enzyme-free molecular signal amplification
- Entropy-driven DNA catalyst paper (try to understand the mechanism and driving forces in detail!): http://www.dna.caltech.edu/Papers/entropy_circuits2007.pdf
- http://dna.caltech.edu/Papers/DNA_catalyst_characterization2010.pdf
- http://dna.caltech.edu/Papers/allosteric_catalyst2008.pdf
- http://dna.caltech.edu/Papers/linear_classifier2011_LNCS.pdf
- For comparison, see these references on RT-PCR:
DNA logic gates
- http://pubs.rsc.org/en/Content/ArticleLanding/2009/CC/b910288d
- log-in through countway.harvard.edu to download article
- http://onlinelibrary.wiley.com/doi/10.1002/ijch.201000069/pdf
- good review article on logic gate design for biosensors
Gold Nanoparticles
- include Rothemund paper on hybridizing AuNPs
