Biomod/2011/Harvard/HarvarDNAnos:LabNotebook Nick/2011/06/06: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(Autocreate 2011/06/06 Entry for Biomod/2011/Harvard/HarvarDNAnos:LabNotebook_Nick)
 
No edit summary
Line 6: Line 6:
| colspan="2"|
| colspan="2"|
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==Entry title==
 
* Insert content here...
====Monday (2011-06-06)====
* This morning we began with a brainstorming session and discussed a few different box designs that we hope to represent as caDNAno files.
* Throughout the day, I designed a six sided box with parallel helices and a hole in one side.  My initial inclination is to create a staple-lock-staple mesh over the designed hole to contain cargo that is loaded into the box pre-folding.  This mesh could (irreversibly) be removed using a key strand or a designed restriction enzyme site at staple-staple interfaces.
::[http://openwetware.org/wiki/Image:Perkons_Box1.json Perkons_Box1.json]
* Below is one of the scariest looking caDNAno screens after hitting auto-staple
[[Image:Fbookperkons1.jpg | 300x300px]]
* Below is a screenshot of the cleaner, and much less intimidating, CanDo output. It looks like the design was a success!  Now to design a cover for the hole that can be opened by a separate mechanism...
[[Image:Perkonsfbook2.jpg | 300x300px]]
 
 





Revision as of 18:48, 27 June 2011

Project name <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Monday (2011-06-06)

  • This morning we began with a brainstorming session and discussed a few different box designs that we hope to represent as caDNAno files.
  • Throughout the day, I designed a six sided box with parallel helices and a hole in one side. My initial inclination is to create a staple-lock-staple mesh over the designed hole to contain cargo that is loaded into the box pre-folding. This mesh could (irreversibly) be removed using a key strand or a designed restriction enzyme site at staple-staple interfaces.
Perkons_Box1.json
  • Below is one of the scariest looking caDNAno screens after hitting auto-staple

  • Below is a screenshot of the cleaner, and much less intimidating, CanDo output. It looks like the design was a success! Now to design a cover for the hole that can be opened by a separate mechanism...