Biomod/2011/HKBU/NBgamers:Resources

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NBgamers (Team of NanoBiotechnology)
 

Resources

Content

  1. About Biomod
  2. Image Process
  3. Programming Language
  4. 3D Computer Graphics Software
  5. Learning HTML
  6. Reference

About Biomod

  • Biomod
  • BIOMOD is a bio-molecular design competition that provides undergraduates an opportunity to systematically engineer the self-assembly of biological macromolecules into complex nanoscale machines for scientific and technological purposes. (Reference: Biomod: About Biomod)


Image Process

  • ImageJ
  • ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health. ImageJ was designed with an open architecture that provides extensibility via Java plugins and recordable macros. Custom acquisition, analysis and processing plugins can be developed using ImageJ's built-in editor and a Java compiler. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging, to radiological image processing, multiple imaging system data comparisons[5] to automated hematology systems. ImageJ's plugin architecture and built in development environment has made it a popular platform for teaching image processing. (Reference: Wikipedia: ImageJ)


Programming Language

  • MATLAB
  • MATLAB (matrix laboratory) is a numerical computing environment and fourth-generation programming language. Developed by MathWorks, MATLAB allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages, including C, C++, Java, and Fortran. (Reference: Wikipedia: MATLAB)


3D Computer Graphics Software

  • Autodesk Maya
  • Autodesk Maya, commonly shortened to Maya, is 3D computer graphics software that runs on Linux, Mac OS and Microsoft Windows, originally developed by Alias Systems Corporation and currently owned and developed by Autodesk, Inc. It is used to create interactive 3D applications, including video games, animated film, TV series, or visual effects. (Reference: Wikipedia: Autodesk Maya)


Learning HTML

  • W3Schools
  • W3Schools is a web developer's portal, with tutorials and references relating to web development subjects, including HTML, XML, CSS, JavaScript, PHP, and SQL. W3Schools is free of charge, and is funded through text and display advertising. The tutorials and references on the website and the related code are proprietary. The site derives its name from the abbreviation for the World Wide Web; W3 is a numeronym of WWW. W3Schools is not affiliated in any way with the W3C. (Reference: Wikipedia: W3Schools)


Reference

  • Jun Lu, Gad Getz, Eric A. Miska, et. al. MicroRNA expression profiles classify human Cancers Nature 10, 834-838 (2005)
  • Stefanie Sassen, Eric A.Miska, Carlos Caldas MicroRNA—implications for cancer Virchows Arch 452:1–10 (2008)
  • C. U. Murade, V. Subramaniam, C. Otto, and Martin L. Bennink, Interaction of Oxazole Yellow Dyes with DNA Studied with Hybrid Optical Tweezers and Fluorescence Microscopy, Biophysical Journal 97, 835–843, (2009)
  • Ban, T., Hoshino, M., Takahashi, S., Hamada, D., Hasegawa, K., Naiki, H., and Goto, Y. J. Direct Observation of Ab Amyloid Fibril Growth and Inhibition Mol. Biol., 344, 757-767 (2004)
  • Igorl. Medintz, H. Tetsuo Uydea, Ellen R. Goldman, Hedimattoussi Quantum dot bioconjugates for imaging, labelling and sensing, nature materials 4, 435-446, (2005)
  • Mingyong Han, Xiaohu Gao, Jack Z. Su, and Shuming Nie, Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules, nature biotechnology 19, 631-635 (2001)
  • Igorl. Medintz, et. al. Self-assembled nanoscale biosensors based on quantum dot FRET donors, nature materials 2, 630-638, (2003)
  • Chun-yang Zhang and Lawrence W. Johnson, Quantum-Dot-Based Nanosensor for RRE IIB RNA−Rev Peptide Interaction Assay, J. Am. Chem. Soc.,128 (16),5324–5325, (2006)
  • EP Diamandis,TK Christopoulos, The biotin-(strept)avidin system: principles and applications in biotechnology, Clinical Chemistry 37,625-636,(1991)
  • Alastair W. Wark, Hye Jin Lee,Robert M.Corn, Multiplexed Detection Methods for Profiling MicroRNA Expression in Biological Samples, Angewandte Chemie International Edition, 47(4), 644-652, (2008)

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