Biomod/2011/Caltech/DeoxyriboNucleicAwesome/SPEX Results - Revision history

Zibo Chen: /* Random Walking with Different lengths of tracks using different starting sites */

Zibo Chen — Fri, 04 Nov 2011 02:50:34 GMT

Random Walking with Different lengths of tracks using different starting sites

←Older revision		Revision as of 02:50, 4 November 2011
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-	[[Image:SPEX_Sum.~~PNG‎‎~~ \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]	+	[[Image:SPEX_Sum.PNG \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]

	== Random Walking with full length of tracks: Comparison ==		== Random Walking with full length of tracks: Comparison ==

Zibo Chen: /* Random Walking with Different lengths of tracks using different starting sites */

Zibo Chen — Fri, 04 Nov 2011 02:45:51 GMT

Random Walking with Different lengths of tracks using different starting sites

←Older revision		Revision as of 02:45, 4 November 2011
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	{\| style= "background: transparent; margin: auto;"		{\| style= "background: transparent; margin: auto;"
	\|[[Image:sslide9.jpg‎ \|thumb\|center\|alt=test\|400px\|Longest track ]]		\|[[Image:sslide9.jpg‎ \|thumb\|center\|alt=test\|400px\|Longest track ]]
-	[[Image:sslide10.jpg‎ \|thumb\|center\|400px\|alt=test\|~~Middle~~ track]]	+	[[Image:sslide10.jpg‎ \|thumb\|center\|400px\|alt=test\|Medium Length track]]
	\|[[Image:sslide11.jpg \|thumb\|center\|400px\|alt=test\|Shortest track ]]		\|[[Image:sslide11.jpg \|thumb\|center\|400px\|alt=test\|Shortest track ]]
	[[Image: sw.jpg‎ \|thumb\|center\|400px\|alt=test\|Space Walk]]		[[Image: sw.jpg‎ \|thumb\|center\|400px\|alt=test\|Space Walk]]
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	[[Image:SPEX_Sum.PNG‎‎ \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]		[[Image:SPEX_Sum.PNG‎‎ \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]
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	== Random Walking with full length of tracks: Comparison ==		== Random Walking with full length of tracks: Comparison ==

YAE LIM Lee at 13:56, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:56:29 GMT

←Older revision		Revision as of 13:56, 3 November 2011
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	[[Image: full_tracks.jpg \|thumb\|center\|650px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]		[[Image: full_tracks.jpg \|thumb\|center\|650px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]
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YAE LIM Lee at 13:55, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:55:39 GMT

←Older revision		Revision as of 13:55, 3 November 2011
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-	[[Image: full_tracks.jpg \|thumb\|center\|~~700px~~\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image: full_tracks.jpg \|thumb\|center\|650px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]

YAE LIM Lee at 13:54, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:54:52 GMT

←Older revision		Revision as of 13:54, 3 November 2011
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-	[[Image: ~~full_track_2~~.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image: full_tracks.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]

YAE LIM Lee at 13:51, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:51:34 GMT

←Older revision		Revision as of 13:51, 3 November 2011
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-	[[Image:~~full_length_track~~.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image: full_track_2.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]

YAE LIM Lee at 13:49, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:49:32 GMT

←Older revision		Revision as of 13:49, 3 November 2011
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-	== ~~Comparison:~~ Random Walking with full length of tracks ==	+	== Random Walking with full length of tracks: Comparison ==


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-	[[Image:~~Full_track~~.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image:full_length_track.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]

YAE LIM Lee at 13:48, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:48:57 GMT

←Older revision		Revision as of 13:48, 3 November 2011
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-	[[Image:~~Full track~~.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image:Full_track.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]

YAE LIM Lee at 13:46, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:46:04 GMT

←Older revision		Revision as of 13:46, 3 November 2011
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	We used a [[Biomod/2011/Caltech/DeoxyriboNucleicAwesome/Simulation\|stochastic MATLAB simulation]] to estimate half-completion times for walkers starting on truncated tracks of varying lengths:		We used a [[Biomod/2011/Caltech/DeoxyriboNucleicAwesome/Simulation\|stochastic MATLAB simulation]] to estimate half-completion times for walkers starting on truncated tracks of varying lengths:
-	{\| class="wikitable" border="1" style="text-align: center"	+
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		+	{\| class="wikitable" border="1" style="text-align: center"
	\|-		\|-
	! Start Site, Truncated Track		! Start Site, Truncated Track
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-	[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|~~400px~~\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]	+	[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|500px\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]

-	[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|~~400px~~\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]	+	[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|500px\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]

-	[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|~~400px~~\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]	+	[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|500px\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]


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	We made a comparison between the models from Matlab simulation and random walk formulae. Results are summarized in the table below.		We made a comparison between the models from Matlab simulation and random walk formulae. Results are summarized in the table below.
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	{\| class="wikitable" border="1" style="text-align: center"		{\| class="wikitable" border="1" style="text-align: center"

YAE LIM Lee at 13:44, 3 November 2011

YAE LIM Lee — Thu, 03 Nov 2011 13:44:48 GMT

←Older revision		Revision as of 13:44, 3 November 2011
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-	[[Image:Insertion.jpg\|thumb\|center\|~~800px~~\|Figure 0. Verification of random walking on origami using fluorophore and quencer. When a walker reaches to the walker goal, fluorophore is quenched and bulk fluorescent level decreases]]	+	[[Image:Insertion.jpg\|thumb\|center\|700px\|Figure 0. Verification of random walking on origami using fluorophore and quencer. When a walker reaches to the walker goal, fluorophore is quenched and bulk fluorescent level decreases]]


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-	[[Image:Full track.jpg \|thumb\|center\|~~800px~~\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image:Full track.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]


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-	~~{\| style= "background: transparent; margin: auto;"~~	+	[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|400px\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]
-	\|[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|~~323px~~\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]	+
-	\|[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|~~300px~~\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]	+	[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|400px\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]
-	\|[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|~~300px~~\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]	+
-	\|}	+	[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|400px\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]

←Older revision		Revision as of 02:45, 4 November 2011
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	{\| style= "background: transparent; margin: auto;"		{\| style= "background: transparent; margin: auto;"
	\|[[Image:sslide9.jpg‎ \|thumb\|center\|alt=test\|400px\|Longest track ]]		\|[[Image:sslide9.jpg‎ \|thumb\|center\|alt=test\|400px\|Longest track ]]
-	[[Image:sslide10.jpg‎ \|thumb\|center\|400px\|alt=test\|~~Middle~~ track]]	+	[[Image:sslide10.jpg‎ \|thumb\|center\|400px\|alt=test\|Medium Length track]]
	\|[[Image:sslide11.jpg \|thumb\|center\|400px\|alt=test\|Shortest track ]]		\|[[Image:sslide11.jpg \|thumb\|center\|400px\|alt=test\|Shortest track ]]
	[[Image: sw.jpg‎ \|thumb\|center\|400px\|alt=test\|Space Walk]]		[[Image: sw.jpg‎ \|thumb\|center\|400px\|alt=test\|Space Walk]]
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	[[Image:SPEX_Sum.PNG‎‎ \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]		[[Image:SPEX_Sum.PNG‎‎ \|thumb\|center\|600px\|Figure 4. A plot of half completion time versus distance from goal.]]
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	== Random Walking with full length of tracks: Comparison ==		== Random Walking with full length of tracks: Comparison ==

←Older revision		Revision as of 13:44, 3 November 2011
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-	[[Image:Insertion.jpg\|thumb\|center\|~~800px~~\|Figure 0. Verification of random walking on origami using fluorophore and quencer. When a walker reaches to the walker goal, fluorophore is quenched and bulk fluorescent level decreases]]	+	[[Image:Insertion.jpg\|thumb\|center\|700px\|Figure 0. Verification of random walking on origami using fluorophore and quencer. When a walker reaches to the walker goal, fluorophore is quenched and bulk fluorescent level decreases]]


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-	[[Image:Full track.jpg \|thumb\|center\|~~800px~~\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]	+	[[Image:Full track.jpg \|thumb\|center\|700px\|Figure 5.Comparison between samples with various lengths of tracks. PT = partial tracks. FT = full tracks. SP = starting positions. SW = space walk]]


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-	~~{\| style= "background: transparent; margin: auto;"~~	+	[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|400px\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]
-	\|[[Image:SPEX_Theo_2.PNG‎ \|thumb\|center\|alt=test\|~~323px~~\|Figure 7(1). SPEX data fitting for random walking on the longest track (SP10). ]]	+
-	\|[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|~~300px~~\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]	+	[[Image:SPEX_Theo_3.PNG‎ \|thumb\|center\|400px\|alt=test\|Figure 7(2). SPEX data fitting for random walking on the medium length track (SP22). ]]
-	\|[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|~~300px~~\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]	+
-	\|}	+	[[Image:SPEX_Theo_4.PNG‎ \|thumb\|center\|400px\|alt=test\|Figure 7(3). SPEX data fitting for random walking on the shortest track (SP34). ]]