Biomod/2011/Caltech/DeoxyriboNucleicAwesome/References

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===B===
===B===
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*Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded dna probes and targets containing empedded recognition segments. ''Nucleic Acids Research,'' 1-13.
+
*Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded DNA probes and targets containing empedded recognition segments. ''Nucleic Acids Research,'' 1-13.
-
*Bonnet, G., Krichevsky, O., & Libchaber, A. (1998). Kinetics of conformational fluctuations in dna haripin-loops. ''PNAS, 95,'' 8602-8606.
+
*Bath, J., Green, S. J, Allen, K. E., & Tuberfield, A. J. (2009). Mechanism for a directional, processive, and reversible DNA motor. ''Small, 5''(13), 1513-1516.
 +
*Bonnet, G., Krichevsky, O., & Libchaber, A. (1998). Kinetics of conformational fluctuations in DNA haripin-loops. ''PNAS, 95,'' 8602-8606.
===D===
===D===
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*Dirks, R. M. , Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of dna hybridization in solutions. ''Nucleic Acids Research, 32''(4), 1392-1403.
+
*Dirks, R. M. , Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Nucleic Acids Research, 32''(4), 1392-1403.
 +
===F===
 +
*Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E., & Murata, S. (2007). Toward relaible algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. ''Nano Letters, 8''(7), 1791-1797.
===G===
===G===
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*Gu, H. , Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable dna nanoscale assembly line. ''Nature, 465,'' 202-205.
+
*Gu, H. , Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. ''Nature, 465,'' 202-205.
===M===
===M===
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*Morrison, L. E. , & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of dna hybridization in solutions. ''Biochemestry, 32,'' 3095-3104.
+
*Morrison, L. E. , & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. ''Biochemestry, 32,'' 3095-3104.
*Muscat, R. A. , Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. ''Nano Letters, 11,'' 982-987.
*Muscat, R. A. , Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. ''Nano Letters, 11,'' 982-987.
===S===
===S===
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*SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide dna nearest-neighbor thermodynamics. ''PNAS, 95,'' 1460-1465.
+
*SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. ''PNAS, 95,'' 1460-1465.
 +
===V===
 +
*Venkataraman, S., Dirks, R. M, Rothemund, P. W. K., Winfree, E., & Pierce, N. A. (2007). An autonomous polymerization motor powered by DNA hybridization. ''Nature Nanotechnology,'' 1-5.
===W===
===W===
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*Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-dna finite-state automata with finite memory. ''PNAS, 107''(51), 21996-22001.
+
*Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-DNA finite-state automata with finite memory. ''PNAS, 107''(51), 21996-22001.
-
*Wetmur, J. G. (1991). Dna probes: applications of the principles of nucleic acid hybridization. ''Critical Reviews in Biochemistry and Molecular Biology, 26''(3/4), 227-259.
+
*Wetmur, J. G. (1991). DNA probes: applications of the principles of nucleic acid hybridization. ''Critical Reviews in Biochemistry and Molecular Biology, 26''(3/4), 227-259.
*Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. ''Nature Nanotechnology, 6,'' 166–169.
*Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. ''Nature Nanotechnology, 6,'' 166–169.
 +
===Z===
 +
*Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. ''JACS, 131,'' 17303-17314.
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Revision as of 17:05, 21 June 2011

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Thursday, May 23, 2013

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References

Contents

Referenced Papers

Alphabetical by First Author


B

  • Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded DNA probes and targets containing empedded recognition segments. Nucleic Acids Research, 1-13.
  • Bath, J., Green, S. J, Allen, K. E., & Tuberfield, A. J. (2009). Mechanism for a directional, processive, and reversible DNA motor. Small, 5(13), 1513-1516.
  • Bonnet, G., Krichevsky, O., & Libchaber, A. (1998). Kinetics of conformational fluctuations in DNA haripin-loops. PNAS, 95, 8602-8606.

D

  • Dirks, R. M. , Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. Nucleic Acids Research, 32(4), 1392-1403.

F

  • Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E., & Murata, S. (2007). Toward relaible algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. Nano Letters, 8(7), 1791-1797.

G

  • Gu, H. , Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. Nature, 465, 202-205.

M

  • Morrison, L. E. , & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. Biochemestry, 32, 3095-3104.
  • Muscat, R. A. , Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. Nano Letters, 11, 982-987.

S

  • SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. PNAS, 95, 1460-1465.

V

  • Venkataraman, S., Dirks, R. M, Rothemund, P. W. K., Winfree, E., & Pierce, N. A. (2007). An autonomous polymerization motor powered by DNA hybridization. Nature Nanotechnology, 1-5.

W

  • Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-DNA finite-state automata with finite memory. PNAS, 107(51), 21996-22001.
  • Wetmur, J. G. (1991). DNA probes: applications of the principles of nucleic acid hybridization. Critical Reviews in Biochemistry and Molecular Biology, 26(3/4), 227-259.
  • Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. Nature Nanotechnology, 6, 166–169.

Z

  • Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. JACS, 131, 17303-17314.


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