Biomod/2011/Caltech/DeoxyriboNucleicAwesome/Origami Layouts - Revision history

YAE LIM Lee at 11:42, 3 November 2011

2011-11-03T11:42:52Z

←Older revision		Revision as of 11:42, 3 November 2011
Line 8:		Line 8:
	Light-blue dots: marker to distingusich the orientation of the origami for AFM images		Light-blue dots: marker to distingusich the orientation of the origami for AFM images

-	[[Image: ssslide1.jpg \| 700px\|thumb\|center\|~~White dots: where we can extend the probes to attach other strands~~	+	[[Image: ssslide1.jpg \| 700px\|thumb\|center\|Regular rectangle origami diagram]]
-		+
-	~~Light-blue dots: marker to distingusich the orientation of the~~ origami ~~for AFM images~~	+
-		+
-	]]	+


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	=====Diagonal arrangement of tracks VS. Vertical arrangement of tracks=====		=====Diagonal arrangement of tracks VS. Vertical arrangement of tracks=====

-	[[Image: diagonal.jpg \| 300px\|thumb\|center]]	+	[[Image: diagonal.jpg \| 300px\|thumb\|center \| Diagonal arrangement of tracks VS. Vertical arrangement of tracks]]


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	Green dots: cargo goal 1		Green dots: cargo goal 1

-	[[Image: ssslide2.jpg \| 700px\|thumb\|center]]	+	[[Image: ssslide2.jpg \| 700px\|thumb\|center\| Origami layout for overall cargo reorganizing behavior]]

	=== Playground design for linear random walking===		=== Playground design for linear random walking===
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	Green star: walker goal		Green star: walker goal

-	[[Image: sslide6.jpg \| 700px\|thumb\|center]]	+	[[Image: sslide6.jpg \| 700px\|thumb\|center\| Origami layout for random walking behavior ]]

	{{Template:DeoxyriboNucleicAwesomeFooter}}		{{Template:DeoxyriboNucleicAwesomeFooter}}

YAE LIM Lee at 11:41, 3 November 2011

2011-11-03T11:41:32Z

←Older revision		Revision as of 11:41, 3 November 2011
Line 8:		Line 8:
	Light-blue dots: marker to distingusich the orientation of the origami for AFM images		Light-blue dots: marker to distingusich the orientation of the origami for AFM images

-	[[Image: ssslide1.jpg \| 700px\|thumb\|center]]	+	[[Image: ssslide1.jpg \| 700px\|thumb\|center\|White dots: where we can extend the probes to attach other strands
		+
		+	Light-blue dots: marker to distingusich the orientation of the origami for AFM images
		+
		+	]]

YAE LIM Lee at 11:40, 3 November 2011

2011-11-03T11:40:54Z

←Older revision		Revision as of 11:40, 3 November 2011
Line 8:		Line 8:
	Light-blue dots: marker to distingusich the orientation of the origami for AFM images		Light-blue dots: marker to distingusich the orientation of the origami for AFM images

-	[[Image: ssslide1.jpg \| 700px]]	+	[[Image: ssslide1.jpg \| 700px\|thumb\|center]]


Line 16:		Line 16:
	=====Diagonal arrangement of tracks VS. Vertical arrangement of tracks=====		=====Diagonal arrangement of tracks VS. Vertical arrangement of tracks=====

-	[[Image: diagonal.jpg \| 300px]]	+	[[Image: diagonal.jpg \| 300px\|thumb\|center]]


Line 35:		Line 35:
	Green dots: cargo goal 1		Green dots: cargo goal 1

-	[[Image: ssslide2.jpg \| 700px]]	+	[[Image: ssslide2.jpg \| 700px\|thumb\|center]]

	=== Playground design for linear random walking===		=== Playground design for linear random walking===
Line 51:		Line 51:
	Green star: walker goal		Green star: walker goal

-	[[Image: sslide6.jpg \| 700px]]	+	[[Image: sslide6.jpg \| 700px\|thumb\|center]]

	{{Template:DeoxyriboNucleicAwesomeFooter}}		{{Template:DeoxyriboNucleicAwesomeFooter}}

YAE LIM Lee at 10:29, 3 November 2011

2011-11-03T10:29:56Z

←Older revision		Revision as of 10:29, 3 November 2011
Line 38:		Line 38:

	=== Playground design for linear random walking===		=== Playground design for linear random walking===
		+
		+	Since random walking behavior is well understood in 1D track, we built the linear track to test our random walking robot.

	White dots: regular rectangle		White dots: regular rectangle

YAE LIM Lee at 07:08, 3 November 2011

2011-11-03T07:08:41Z

←Older revision		Revision as of 07:08, 3 November 2011
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		+	{{Template:DeoxyriboNucleicAwesomeHeader}}
		+
	== Origami Layout For Various Experiments ==		== Origami Layout For Various Experiments ==

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	[[Image: sslide6.jpg \| 700px]]		[[Image: sslide6.jpg \| 700px]]
		+
		+	{{Template:DeoxyriboNucleicAwesomeFooter}}

YAE LIM Lee at 05:34, 3 November 2011

2011-11-03T05:34:23Z

←Older revision		Revision as of 05:34, 3 November 2011
Line 48:		Line 48:

	[[Image: sslide6.jpg \| 700px]]		[[Image: sslide6.jpg \| 700px]]
-
-	~~=== Playground design for linear random walking with differenct lenghts of tracks ===~~
-
-	~~White dots: regular rectangle~~
-
-	~~Light-blue dots: marker to distingusich the orientation of the origami for AFM images~~
-
-	~~Blue dots: track 1~~
-
-	~~Red dots: track 2~~
-
-	~~Yellow star: walker goal~~
-
-	~~====Longest Track ====~~
-
-	~~[[Image: sslide9.jpg \| 700px]]~~
-
-	~~====Middle Track ====~~
-
-	~~[[Image: sslide10.jpg \| 700px]]~~
-
-	~~====Shortest Track ====~~
-
-	~~[[Image: sslide11.jpg \| 700px]]~~

YAE LIM Lee at 05:33, 3 November 2011

2011-11-03T05:33:13Z

←Older revision		Revision as of 05:33, 3 November 2011
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-	~~===Playground design for overall cargo reorganizing behavior===~~

-	[[Image: diagonal.jpg \| ~~700px~~]]	+	=== Discussion about Arrangements of Tracks ===
		+
		+	=====Diagonal arrangement of tracks VS. Vertical arrangement of tracks=====
		+
		+	[[Image: diagonal.jpg \| 300px]]


	An important to consider is the particular arrangement of substrate strands for the walker. The particular random walker that we are using moves via strand displacement between two types of substrate (substrates A and B), with each walker-substrate pair having an equal number of conjugated bases. This walker performs a random walk via random, energetically neutral strand displacement4. We prefer this model of walker because it allows track substrate to be reused, unlike many burnt-bridges models of walkers that sacrifice track that has already been walked on in order to achieve directional motion5, and is easier to both design and work with. Because this walker can only move from one type of substrate to the other, it needs a path that alternates between substrate types for it to move between any two points. There are two ways of laying out substrate that we have considered: alternating diagonal bands , and alternating vertical bands . Vertical bands allow near-straight-line movement in the horizontal direction, whereas alternating bands allow straight-line movement in the vertical direction, along the short axis of the origami. As movement along the short axis is toward one of the goals, the diagonal arrangement in Figure 1 is thus preferable, as it minimizes the number of steps a walker has to take to get cargo from its planted location to its associated goal.		An important to consider is the particular arrangement of substrate strands for the walker. The particular random walker that we are using moves via strand displacement between two types of substrate (substrates A and B), with each walker-substrate pair having an equal number of conjugated bases. This walker performs a random walk via random, energetically neutral strand displacement4. We prefer this model of walker because it allows track substrate to be reused, unlike many burnt-bridges models of walkers that sacrifice track that has already been walked on in order to achieve directional motion5, and is easier to both design and work with. Because this walker can only move from one type of substrate to the other, it needs a path that alternates between substrate types for it to move between any two points. There are two ways of laying out substrate that we have considered: alternating diagonal bands , and alternating vertical bands . Vertical bands allow near-straight-line movement in the horizontal direction, whereas alternating bands allow straight-line movement in the vertical direction, along the short axis of the origami. As movement along the short axis is toward one of the goals, the diagonal arrangement in Figure 1 is thus preferable, as it minimizes the number of steps a walker has to take to get cargo from its planted location to its associated goal.
		+
		+	===Playground design for overall cargo reorganizing behavior===

	White dots: regular rectangle		White dots: regular rectangle

YAE LIM Lee: /* Playground design for overall cargo reorganizing behavior */

2011-11-03T05:30:35Z

Playground design for overall cargo reorganizing behavior

←Older revision		Revision as of 05:30, 3 November 2011
Line 10:		Line 10:

	===Playground design for overall cargo reorganizing behavior===		===Playground design for overall cargo reorganizing behavior===
		+
		+	[[Image: diagonal.jpg \| 700px]]
		+
		+
		+	An important to consider is the particular arrangement of substrate strands for the walker. The particular random walker that we are using moves via strand displacement between two types of substrate (substrates A and B), with each walker-substrate pair having an equal number of conjugated bases. This walker performs a random walk via random, energetically neutral strand displacement4. We prefer this model of walker because it allows track substrate to be reused, unlike many burnt-bridges models of walkers that sacrifice track that has already been walked on in order to achieve directional motion5, and is easier to both design and work with. Because this walker can only move from one type of substrate to the other, it needs a path that alternates between substrate types for it to move between any two points. There are two ways of laying out substrate that we have considered: alternating diagonal bands , and alternating vertical bands . Vertical bands allow near-straight-line movement in the horizontal direction, whereas alternating bands allow straight-line movement in the vertical direction, along the short axis of the origami. As movement along the short axis is toward one of the goals, the diagonal arrangement in Figure 1 is thus preferable, as it minimizes the number of steps a walker has to take to get cargo from its planted location to its associated goal.

	White dots: regular rectangle		White dots: regular rectangle

YAE LIM Lee at 05:15, 3 November 2011

2011-11-03T05:15:31Z

←Older revision		Revision as of 05:15, 3 November 2011
Line 53:		Line 53:
	====Longest Track ====		====Longest Track ====

-	[[Image: sslide9.jpg \| ~~500px~~]]	+	[[Image: sslide9.jpg \| 700px]]

	====Middle Track ====		====Middle Track ====

-	[[Image: sslide10.jpg \| ~~500px~~]]	+	[[Image: sslide10.jpg \| 700px]]

	====Shortest Track ====		====Shortest Track ====

-	[[Image: sslide11.jpg \| ~~500px~~]]	+	[[Image: sslide11.jpg \| 700px]]

YAE LIM Lee: New page: == Origami Layout For Various Experiments == ===Regular Rectangular Origami === White dots: where we can extend the probes to attach other strands Light-blue dots: marker to distingusic...

2011-11-03T05:13:38Z

New page: == Origami Layout For Various Experiments == ===Regular Rectangular Origami === White dots: where we can extend the probes to attach other strands Light-blue dots: marker to distingusic...

New page

== Origami Layout For Various Experiments ==

===Regular Rectangular Origami ===
White dots: where we can extend the probes to attach other strands

Light-blue dots: marker to distingusich the orientation of the origami for AFM images

[[Image: ssslide1.jpg | 700px]]

===Playground design for overall cargo reorganizing behavior===

White dots: regular rectangle

Light-blue dots: marker to distingusich the orientation of the origami for AFM images

Blue dots: track 1

Red dots: track 2

Organge dots: cargo 1

Green dots: cargo goal 1

[[Image: ssslide2.jpg | 700px]]

=== Playground design for linear random walking===

White dots: regular rectangle

Light-blue dots: marker to distingusich the orientation of the origami for AFM images

Blue dots: track 1

Red dots: track 2

Green star: walker goal

[[Image: sslide6.jpg | 700px]]

=== Playground design for linear random walking with differenct lenghts of tracks ===

White dots: regular rectangle

Light-blue dots: marker to distingusich the orientation of the origami for AFM images

Blue dots: track 1

Red dots: track 2

Yellow star: walker goal

====Longest Track ====

[[Image: sslide9.jpg | 500px]]

====Middle Track ====

[[Image: sslide10.jpg | 500px]]

====Shortest Track ====

[[Image: sslide11.jpg | 500px]]