Biological hardware description language

Review Articles

Programming cells: towards an automated 'Genetic Compiler'

Genetic design: rising above the sequence

Current tools

TinkerCell: modular CAD tool for synthetic biology

Computational design of synthetic gene circuits with composable parts

Modular modeling of cellular systems with ProMoT/Diva

SYCAMORE—a systems biology computational analysis and modeling research environment

GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs

Gene Designer: a synthetic biology tool for constructing artificial DNA segments

BioSpice

Systems Biology Markup Language

Main Page

SBML Software Summary

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

LibSBML: an API Library for SBML

Synthetic Biology Simulation Suite

Main Page

SynBioSS: the synthetic biology modeling suite

SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs