Bioinformatics: Difference between revisions
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*[http://www.uniprot.org/ UniProt (Universal Protein Resource)] is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR | *[http://www.uniprot.org/ UniProt (Universal Protein Resource)] is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR | ||
*[http://dip.doe-mbi.ucla.edu/ DIP] catalogs experimentally determined interactions between proteins, it combines information from a variety of sources to create a single, consistent set of protein-protein interactions | *[http://dip.doe-mbi.ucla.edu/ DIP] catalogs experimentally determined interactions between proteins, it combines information from a variety of sources to create a single, consistent set of protein-protein interactions | ||
*[http://www.genome.ad.jp/kegg/ KEGG]: Kyoto Encyclopedia of Genes and Genomes | |||
*[http://www.bind.ca/Action BIND] - Biomolecular Interaction Network Database | |||
Revision as of 11:08, 8 September 2006
Bioinformatics Discussion Group
Software
- PFAAT - Protein Family Alignment Annotation Tool
Frameworks
- BioCocoa is an open source Cocoa framework for bioinformatics written in Objective-C
Online services
- Biological web services - Taverna Project
- WebLogo - create sequence logos
- T-COFFEE server
- MAFFT: A Program for Multiple Sequence Alignment
- Block WWW Server
- Regulatory Sequence Analysis Tools (RSAT) provide a series of modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences
- GeneDesign β2.0
Databases
- Entrez cross-database search
- ExPASy Proteomics Server is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE
- UniProt (Universal Protein Resource) is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR
- DIP catalogs experimentally determined interactions between proteins, it combines information from a variety of sources to create a single, consistent set of protein-protein interactions
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- BIND - Biomolecular Interaction Network Database
