BioSysBio:Conference Programme With Videos: Difference between revisions

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==Programme: Thursday 11th Jan==
==Programme: Thursday 11th Jan==
===Kick-off===
===Kick-off===
*12.00 – 13.00 Registration  
*12.00 – 13.00 '''Registration'''
*13.00 – 13.15 Opening and welcome
*13.00 – 13.15 '''[http://video.google.com/videoplay?docid=8134736373670981116&hl=en Opening and Welcome]'''
===Opening plenary speakers:===
===Opening plenary speakers:===
*13.15 – 14.00 Hans Westerhoff - University of Manchester -  
*13.15 – 14.00 '''Hans Westerhoff''' - University of Manchester - <br>
**"Systems Biology, hierarchies and robustness: bringing information to Life".
**"Systems Biology, hierarchies and robustness: bringing information to Life".
*14.00– 14.45 Alfonso Valencia - Universidad Autonoma Madrid -
*14.00– 14.45 '''Alfonso Valencia''' - Universidad Autonoma Madrid
** [http://video.google.com/videoplay?docid=-1520735351016817673&hl=en "Coevolution, Networks & Text Mining"]
*14.45 – 15.15 Refreshments
*14.45 – 15.15 Refreshments


===Session 1: Gene regulation and profiling===
===Session 1: Gene regulation and profiling===
*15.15 - 15.55 Roland Eils - DKFZ (German Cancer Research Centre) -
*15.15 - 15.55 '''Roland Eils''' - DKFZ (German Cancer Research Centre)
**"Network based microarray data analysis".
** [http://video.google.com/videoplay?docid=5046651246256913569&hl=en "Network based microarray data analysis"].
*15.55 - 16.20 Martino Barenco - Institute of Child Health UCL (University College London) -
*15.55 - 16.20 '''Martino Barenco''' - Institute of Child Health UCL (University College London) -
**"rHVDM – A fast and user-friendly R package to predict transcription factor targets from microarray time series data."
**"rHVDM – A fast and user-friendly R package to predict transcription factor targets from microarray time series data."
*16.20 - 16.45 Alok Mishra - Imperial College London -
*16.20 - 16.45 '''Alok Mishra''' - Imperial College London
**"Effect of microarray data heterogeneity on gene regulatory module discovery"
** [http://video.google.com/videoplay?docid=4283287372575337176&hl=en Effect of microarray data heterogeneity on gene regulatory module discovery"]
*16.45 - 17.30 '''[http://video.google.com/videoplay?docid=-8057513980521404292&hl=en Rapid Fire Session]'''
*18.00 – 21.00 Industry Partnership Fair and Welcome party sponsored by the Doctoral Training Centre
*18.00 – 21.00 Industry Partnership Fair and Welcome party sponsored by the Doctoral Training Centre


Programme: Friday 12th Jan
==Programme: Friday 12th Jan==
Session 2: (Metabolomics and machine learning: quantitative bioanalysis for systems biology)
===Session 2: Metabolomics and machine learning: quantitative bioanalysis for systems biology===
08.00 - 8.45: Breakfast
*08.00 - 8.45: Breakfast
08.45– 09.25 Douglas Kell - University of Manchester, UK  
*08.45– 09.25 '''Douglas Kell''' - University of Manchester, UK  
09.25 - 09.50 Raul Munoz Hernandez - University of Manchester, UK
** "[http://video.google.com/videoplay?docid=-262870053720891641&hl=en Metabolomics and Machine Learning for Systems Biology]"
Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, cda, by streptomyces coelicolor
*09.25 - 09.50 '''Raul Munoz Hernandez''' - University of Manchester, UK
09.50 - 10.15 Daniel Mateus - CEA/List Saclay, France
**"[http://video.google.com/videoplay?docid=-4812636536087256040&hl=en Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, cda, by streptomyces coelicolor]"
Modeling Genetic Regulatory Networks from specified behaviors
*09.50 - 10.15 '''Daniel Mateus''' - CEA/List Saclay, France
**"[http://video.google.com/videoplay?docid=5184341267429797346&hl=en Modeling Genetic Regulatory Networks from specified behaviors]"


10.15– 11.45 Break & poster session 1
10.15– 11.45 Break & poster session 1


Session 3: (Synthetic Biology and iGEM)
===Session 3: Synthetic Biology and iGEM.===
11.45– 12.15 Randy Rettberg - MIT (Massachusetts Institute of Technology), USA  
*11.45– 12.15 '''Randy Rettberg''' - MIT (Massachusetts Institute of Technology), USA
12.15– 12.35 University of Edinburgh iGEM , UK
** [http://video.google.com/videoplay?docid=2825060788839760342 Introduction to iGEM and the Registry of Standard Biological Parts]
Modeling Arsenic Biosensor System  
*12.15– 12.35 '''University of Edinburgh iGEM''' , UK
12.35– 12.55 iGEM Imperial College London
**"[http://video.google.com/videoplay?docid=-847377595233069496&hl=en Modeling Arsenic Biosensor System]"
Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic.
*12.35– 12.55 '''iGEM Imperial College London'''
12.55– 13.15 University of Cambridge iGEM team, UK
**"[http://video.google.com/videoplay?docid=-5038595884600035062&hl=en Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic]"
Autonomous pattern formation between bacterial populations
*12.55– 13.15 '''University of Cambridge iGEM team''', UK
**[http://video.google.com/videoplay?docid=440341392514433029&hl=en Autonomous pattern formation between bacterial populations]


13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007?  
13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007?
Session 4: (Modeling and databases in systems Biology)
 
14.15– 14.55 Nicolas Le Novere - European Bioinformatics Institute, UK  
===Session 4: Modeling and databases in systems Biology.===
14.55– 15.20 Michael Lees - University of Nottingham
*14.15– 14.55 '''Nicolas Le Novere''' - European Bioinformatics Institute, UK  
BacGrid: Simulations of Bacteria using the GRID
** [http://video.google.com/videoplay?docid=-1376393318880643726 Modeling and databases in systems Biology]
15.20– 15.45 Isabel Rojas - EML Research gGmbH, Heidelberg, Germany
*14.55– 15.20 '''Michael Lees''' - University of Nottingham
SABIO-RK: a database of biochemical reactions and their kinetics
**"[http://video.google.com/videoplay?docid=-3611392376318652170 BacGrid: Simulations of Bacteria using the GRID]"
*15.20– 15.45''' Isabel Rojas''' - EML Research gGmbH, Heidelberg, Germany
**"SABIO-RK: a database of biochemical reactions and their kinetics."


15.45– 17.15 Break & poster session 2
15.45– 17.15 Break & poster session 2


Session 5: (Modeling and modularity, tools for systems biology)
===Session 5: Modeling and modularity, tools for systems biology.===
17.15– 17.55 Herbert Sauro - University of Washington, USA
*17.15– 17.55 '''Herbert Sauro''' - University of Washington, USA
17.55– 18.20 Martin Hemberg - Imperial College London
** "Modeling & modularity, tools for Systems Biology"
A study of the properties of stochastic genetic oscillators
*17.55– 18.20 '''Martin Hemberg''' - Imperial College London
18.20– 18.45 Nuno Lages - Faculty of Sciences of the University of Lisbon  
**"A study of the properties of stochastic genetic oscillators"
Potential role of the glyoxalase pathway as a drug target in L infantum
*18.20– 18.45 '''Nuno Lages''' - Faculty of Sciences of the University of Lisbon  
**"[http://video.google.com/videoplay?docid=-1804110027497651229 Potential role of the glyoxalase pathway as a drug target in L infantum]"


20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group.
20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group.
Programme: Saturday 13th Jan
08.00 - 8.45: Breakfast
Session 6: (Gene regulatory networks, Structural and Computational Genomics)
08.45– 09.25 Sarah Teichmann - Laboratory of Molecular Biology, Cambridge, UK
09.25– 09.50 Sanne Abeln - University of Oxford
Linking evolution of protein structures through fragments
09.50– 10.15 Emily Jefferson - University of Dundee
The relationship between domain-domain interaction orientation and sequence similarity
10.15– 10.45 Refreshments break


Session 7: Synthetic Biology
==Programme: Saturday 13th Jan==
10.45– 11.25  Chris Voigt - UCSD (University of California, San Diego) USA  
*08.00 - 8.45: Breakfast
11.25– 11.50 James Brown - Univeristy of Cambridge
===Session 6: Gene regulatory networks, Structural and Computational Genomics.===
Navigational Control of Bacteria
*08.45– 09.25 '''Sarah Teichmann''' - Laboratory of Molecular Biology, Cambridge, UK
11.50– 12.15 Alfonso Jaramillo - Ecole Polytechnique, France
*09.25– 09.50 '''Sanne Abeln''' - University of Oxford
Computational Design of Proteins With New Functions
**"[http://video.google.com/videoplay?docid=8528995405459519923 Linking evolution of protein structures through fragments]"
12.15– 13.00 Closing Plenary: Ron Weiss - Princeton University
*09.50– 10.15 '''Emily Jefferson''' - University of Dundee
Developments in Synthetic Biology
**"[http://video.google.com/videoplay?docid=7789368425498126859 The relationship between domain-domain interaction orientation and sequence similarity]"
13.00– 13.15 Prize giving and conference close
*10.15– 10.45 Refreshments break
 
===Session 7: Synthetic Biology===
*10.45– 11.25  '''Chris Voigt''' - UCSD (University of California, San Diego) USA  
** "Genetic System Design"
*11.25– 11.50 '''James Brown''' - Univeristy of Cambridge
**"[http://video.google.com/videoplay?docid=1767926969034521741 Navigational Control of Bacteria]"
*11.50– 12.15 '''Alfonso Jaramillo''' - Ecole Polytechnique, France
**"[http://video.google.com/videoplay?docid=6376167468406980461 Computational Design of Proteins With New Functions]"
*12.15– 13.00 Closing Plenary: '''Ron Weiss''' - Princeton University
**"[http://video.google.com/videoplay?docid=-2010003542911577166 Developments in Synthetic Biology]"
*13.00– 13.15 Prize giving and conference close
** (for video see end of Ron Weiss' talk)

Latest revision as of 08:22, 10 February 2007

BioSysBio, 11th-13th January 2007, Manchester, UK.

Programme: Thursday 11th Jan

Kick-off

Opening plenary speakers:

  • 13.15 – 14.00 Hans Westerhoff - University of Manchester -
    • "Systems Biology, hierarchies and robustness: bringing information to Life".
  • 14.00– 14.45 Alfonso Valencia - Universidad Autonoma Madrid
  • 14.45 – 15.15 Refreshments

Session 1: Gene regulation and profiling

Programme: Friday 12th Jan

Session 2: Metabolomics and machine learning: quantitative bioanalysis for systems biology

10.15– 11.45 Break & poster session 1

Session 3: Synthetic Biology and iGEM.

13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007?

Session 4: Modeling and databases in systems Biology.

15.45– 17.15 Break & poster session 2

Session 5: Modeling and modularity, tools for systems biology.

  • 17.15– 17.55 Herbert Sauro - University of Washington, USA
    • "Modeling & modularity, tools for Systems Biology"
  • 17.55– 18.20 Martin Hemberg - Imperial College London
    • "A study of the properties of stochastic genetic oscillators"
  • 18.20– 18.45 Nuno Lages - Faculty of Sciences of the University of Lisbon

20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group.

Programme: Saturday 13th Jan

  • 08.00 - 8.45: Breakfast

Session 6: Gene regulatory networks, Structural and Computational Genomics.

Session 7: Synthetic Biology

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