BioMicroCenter: Difference between revisions

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Latest revision as of 12:43, 17 April 2024

Welcome to the MIT BioMicro Center!

The MIT BioMicro Center is an integrated genomics core facility that provides both expertise and equipment for systems biology. The core has significant resources in next generation sequencing and in high throughput screening as well as bioinformatics and BioIT. The Center is a joint endeavor between the Department of Biology, the Koch Institute for Integrative Cancer Research (Genomics Core and Bioinformatics and Computing Core), the Department of Biological Engineering and the MIT Center for Environmental Health Sciences (Genomics and Informatics Facilities Core).

The BioMicro Center

BMC Internal wiki

Sequencing Technologies

Illumina Sequencing (NovaSeq, NextSeq, MiSeq)
Singular Sequencing (G4)
Element Sequencing (AVITI)
PacBio Sequencing with Revio
Nanopore Sequencing with PromethION

High Throughput

Liquid Handlers (Tecan EVO / SPT Mosquito)
Plate Readers (BioTek Synergy H1 / Varioskan)

Illumina Library Services

Short Read Sample Preparation
- Standard Methods for *DNA* *RNA*
- High Throughput Methods for *DNA* *RNA*
Single Cell Prep, Sequencing and Analysis
Pippin Prep automated electrophoresis system
Covaris E220 Focused-ultrasonicator

Bioinformatics and BioIT

Other Services

68-322 ---- biomicro@mit.edu ---- 617-715-4533

- Denotes services available through the KI Genomics Core in the High Throughput Facility located in 76-047 or in the KI Bioinformatics and Computing Core in 76-189 and are not directly part of the BioMicro Center.

Retrieved from "https://openwetware.org/mediawiki/index.php?title=BioMicroCenter&oldid=1114570"

@@ Line 1: / Line 1: @@
+<!--
+#<h2> COVID-19 UPDATE: 6/7/2021 </h2>
+#
+#<B> [[BioMicroCenter:COVID|Current procedures for WALKUP and ASSISTED services can be found on our COVID page]] </B><BR><BR>
+#* All submissions for assisted and services MUST be approved before you bring samples or use equipment in the Center.
+#* Informatics support remains unchanged during COVID.
+#
+#External Users:<BR>
+#* No walkup services are available for external users. Samples can be hand delivered outside of Building 68 or shipped by Fedex. Shipping address is #in our [[BioMicroCenter:FAQ|FAQ]]
+-->
 <h2 align="center"> Welcome to the MIT BioMicro Center! </h2>
-The '''MIT BioMicro Center''' is an integrated genomics facility that provides both expertise and equipment for systems biology. The core has significant resources in microarrays, next generation sequencing and in high throughput screening as well as bioinformatics and BioIT. The Center is a joint endeavor between the [http://biology.mit.edu Department of Biology], the [http://ki.mit.edu Koch Institute for Integrative Cancer Research] (Genomics Core and Bioinformatics and Computing Core), the [http://web.mit.edu/be Department of Biological Engineering]  and the [http://cehs.mit.edu MIT Center for Environmental Health Sciences] (Genomics and Imaging Facilities Core).
+<!--'''COVID restriction information is located here for [[BioMicroCenter:COVID|-ASSISTED SERVICES- . -WALK UP INSTRUMENTS- . -NON-MIT USERS-]]<BR><BR>'''-->
+The '''MIT BioMicro Center''' is an integrated genomics core facility that provides both expertise and equipment for systems biology. The core has significant resources in next generation sequencing and in high throughput screening as well as bioinformatics and BioIT. The Center is a joint endeavor between the [http://biology.mit.edu Department of Biology], the [http://ki.mit.edu Koch Institute for Integrative Cancer Research] (Genomics Core and Bioinformatics and Computing Core), the [http://web.mit.edu/be Department of Biological Engineering]  and the [http://cehs.mit.edu MIT Center for Environmental Health Sciences] (Genomics and Informatics Facilities Core).
+<BR><BR>
 {| width="100%"
   |- valign="top"
   |rowspan=3 width="33%"|
   {|
-   |[[Image:BMC_Logo_Large.png|300px|center]]
+   |[[File:Bmclogo2020.png|400 px|center]]
   |}
   |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
@@ Line 13: / Line 25: @@
 <BIG><B> The BioMicro Center </B></BIG>
 * [[BioMicroCenter:News|'''News & General Information''']]
-* [[BioMicroCenter:People| Staff]]
+* [[BioMicroCenter:People| Staff]] <!--/ [[BioMicroCenter:Jobs|Positions Available]]-->
+* [[BioMicroCenter:Forms|Sample Submission Forms and Scheduling]]
 * [[BioMicroCenter:Pricing|Pricing]]
-* [[BioMicroCenter:Forms|Sample Submission Forms and Scheduling]]
+* [[BioMicroCenter:Technology_Seminar_Series| Technology Seminar Series]]
-* [[BioMicroCenter:Jobs|Positions Available]]
 * [[BioMicroCenter:FAQ|FAQs]]
+[https://wikis.mit.edu/confluence/display/bmc ''BMC Internal wiki'']
   |}
   |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
   {|
    |valign="top" width="10%" align="left" height="145px"|
-<BIG><B> Genomics </B></BIG>
+<BIG><B> [[BioMicroCenter:Sequencing|Sequencing Technologies]] </B></BIG>
-* [[BioMicroCenter:Sequencing|Illumina Sequencing]]
+* [[BioMicroCenter:Illumina_Sequencing|Illumina Sequencing]] (NovaSeq, NextSeq, MiSeq)
-* [[BioMicroCenter:Illumina_Library_Preparation|Illumina Sample Preparation]]
+* [[BioMicroCenter:Singular Sequencing|Singular Sequencing]] (G4)
-* [[BioMicroCenter:ChIP|Chromatin Immunoprecipitation]]
+* [[BioMicroCenter:Element Sequencing|Element Sequencing]] (AVITI)
-* [[BioMicroCenter:Microarrays| Microarrays]]
+* [[BioMicroCenter:PacBio| PacBio Sequencing]] with Revio
-* [[BioMicroCenter:PacBio| PacBio Sequencing]] via U.Mass Medical Deep Sequencing Core Facility+
+* [[BioMicroCenter:Oxford Nanopore Technologies| Nanopore Sequencing]] with PromethION
-+ coming soon
   |}
   |- valign="top"
@@ Line 34: / Line 46: @@
   {|
    |valign="top" width="10%" align="left" height="145px"|
-<BIG><B> Screening Services </B></BIG>
+<BIG><B> High Throughput </B></BIG>
-* [[BioMicroCenter:Tecan Freedom Evo|Automated Liquid Handling]]
+* [[BioMicroCenter:Tecan Freedom Evo|Liquid Handlers]] ([[BioMicroCenter:Tecan_Freedom_Evo#JOHNNY_5|Tecan EVO]] / [[BioMicroCenter:Tecan_Freedom_Evo#SPT_LABTECH_MOSQUITO_HV|SPT Mosquito]])
-* [[BioMicroCenter:Varioskan| Plate Reading]]
+* Plate Readers (BioTek Synergy H1 / [[BioMicroCenter:Varioskan| Varioskan)]]
   |}
   |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
   {|
-   |valign="top" width="10%" align="left" height="145px"|
+   |valign="top" width="10%" align="left" height="145px|
-<BIG><B> Other Services </B></BIG>
+<BIG><B> Illumina Library Services </B></BIG>
-* [[BioMicroCenter:RTPCR|Fluidigm BioMark System]]
+* [[BioMicroCenter:Illumina_Library_Preparation|Short Read Sample Preparation]]
-* [[BioMicroCenter:RTPCR#Traditional_Real_Time_PCR| PCR and RT-PCR]]
+** Standard Methods for [[BioMicroCenter:DNA_LIB| *DNA* ]] [[BioMicroCenter:RNA_LIB| *RNA* ]]
-* [[BioMicroCenter:2100BioAnalyzer|BioAnalyzer]]
+** High Throughput Methods for [[BioMicroCenter:DNA_HTL| *DNA* ]]  [[BioMicroCenter:RNA_HTL| *RNA* ]]
-* [[BioMicroCenter:Advanced analytical Fragment analyzer|Advanced analytical Fragment analyzer]]
+* [[BioMicroCenter:SingleCell|Single Cell Prep, Sequencing and Analysis]]
-* [[BioMicroCenter:PippinPrep|Pippen Prep automated electrophoresis system]]
+* [[BioMicroCenter:PippinPrep|Pippin Prep automated electrophoresis system]]
-* [[BioMicroCenter:Covaris|Covaris S2 Focused-ultrasonicator]]
+* [[BioMicroCenter:Covaris|Covaris E220 Focused-ultrasonicator]]
   |}
   |- valign="top"
@@ Line 53: / Line 68: @@
   {|
    |valign="top" width="10%" align="left" height="145px"|
-<BIG><B> [[BioMicroCenter:Computing|Informatics and BioIT]] </B></BIG>
+<BIG><B> [[BioMicroCenter:Computing|Bioinformatics and BioIT]] </B></BIG>
 * [[BioMicroCenter:BioInformaticsStaff|Bioinformatic Consulting]]
+* [[BioMicroCenter:DataManagement|Data Management]]
 * [[BioMicroCenter:Computing#HARDWARE|Servers]]
 * [[BioMicroCenter:Computing#SOFTWARE|Software]]
-* [[BioMicroCenter:BioinfoClasses|Mini Courses]]
+* [[BioMicroCenter:BioinfoClasses|Informatics Training Sessions]]
 * [[BioMicroCenter:BIG_meeting|BIG meeting Schedule]]
+* [https://mit-ki.ilabsolutions.com/sc/3189/bioinformatics-and-computing-core?tab=services Poster Printing [[Image:Ki small.jpg]]]
   |}
   |align="center" width="33%" style="background-color:transparent; border:1px solid purple; height:150px;"|
   {|
    |valign="top" width="10%" align="left" height="145px"|
-<BIG><B> Useful Links </B></BIG>
+<BIG><B> Other Services </B></BIG>
-* [[BioMicroCenter:Links| Resources]]
+* [[BioMicroCenter:RTPCR| PCR and RT-PCR]]
-* [[BioMicroCenter:Protocols| Protocols]]
+* [[BioMicroCenter:QC|BioAnalyzer / AATI Fragment Analyzer / Femto Pulse]]
-* [[BioMicroCenter:Research| Research]]
+* [http://mailman.mit.edu:/mailman/listinfo/biostuff Biostuff mailing list]
-* [http://mailman.mit.edu:/mailman/listinfo/biostuff biostuff mailing list]
-* [[BioMicroCenter:Technology Seminar Series| Technology Seminar Series]]
-* [http://biocenter.private.openwetware.org/wiki/BioMicroCenter BMC Internal site]
   |}
 |}
 <h2 align="center">  </h2>
-<h2 align="center"> [http://whereis.mit.edu 68-316] ---- biomicro@mit.edu ---- 617-715-4533  </h2>
+<h2 align="center"> [http://whereis.mit.edu 68-322] ---- biomicro@mit.edu ---- 617-715-4533  </h2>
+[[Image:Ki_small.jpg]] - Denotes services available through the KI Genomics Core in the High Throughput Facility located in 76-047 or in the KI Bioinformatics and Computing Core in 76-189 and are not directly part of the BioMicro Center.<BR>

BioMicroCenter: Difference between revisions

Latest revision as of 12:43, 17 April 2024

Welcome to the MIT BioMicro Center!

68-322 ---- biomicro@mit.edu ---- 617-715-4533

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