Beta-glucuronidase protocols: Difference between revisions
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===Materials=== | ===Materials=== | ||
*1M Na<sub>2</sub>CO<sub>3</sub> | *1M Na<sub>2</sub>CO<sub>3</sub> | ||
*100mM NaH<sub>2</sub>PO<sub>4</sub> | *100mM Sodium Phosphate buffer (pH=7) | ||
:*50mM NaH<sub>2</sub>PO<sub>4</sub> | |||
:*100mM Na<sub>2</sub>HPO<sub>4</sub> | |||
*100mM EDTA | *100mM EDTA | ||
*0.1% SDS (w/v in H<sub>2</sub>O) | *0.1% SDS (w/v in H<sub>2</sub>O) | ||
Line 64: | Line 66: | ||
*Triton X-100 | *Triton X-100 | ||
===Method=== | ===Method=== | ||
:1. | :1. Grow culture until OD<sub>600</sub> is between 0.6 and 1.0 | ||
::* | :2. DPrepare 10mL of GUS Buffer (measures 10 samples) by adding: | ||
::*3mL of 100mM Na<sub>2</sub>HPO<sub>4</sub> | |||
::*2mL of 100mM NaH<sub>2</sub>PO<sub>4</sub> | |||
::*15μL 100mM EDTA | ::*15μL 100mM EDTA | ||
::*1.5μL Triton X-100 | ::*1.5μL Triton X-100 |
Revision as of 00:42, 26 January 2012
Introduction
These are methods to screen for and assay the activity of the common reporter enzyme β-Glucuronidase (GUS) activity. Because the catalytic activity of β-Glucuronidase is very similar to β-Galactosidase (LacZ) these protocols are also very similar to the LacZ protocols.
Plate Screen
Materials
- Media of choice
- Agar
- X-gluc stock solution (50mg/mL in DMF)
Method
- Prepare your liquid media and add the desired amount of agar (usually 1-2%).
- Autoclave the media for the requisite time.
- Add 1.2μL of X-gluc stock solution for every mL of media (e.g. if making 1L of media add 1.2ml of stock solution)
- If desired, add antibiotic.
- Pour plates.
Notes
Culture Screen
Materials
- Cultured Cells
- Suspension Buffer (50mM NaH2PO4
- X-gluc stock solution (50mg/mL)
- Premeabilization Solution (9:1 acetone to toluene (v/v))
Method
- Pellet 1ml of culture by centrifugation
- Discard the supernatant and resuspend the pellet in 400μL Suspension Buffer
- Add 25ul of Permeabilization Solution to cell suspension.
- Incubate at 37°C for 30-60 minutes.
- Add 5μL of X-gluc stock solution.
- A green/blue color should develop shortly in positive cultures.
Notes
- Depending on what cells you're using, the solvent mix may not permeabilize your cells. In such a case you might attempt using 25μL of chloroform or 12.5μL of 1%SDS or both.
Assay 1
Materials
- Suspension Solution (50mM NaH2PO4)
- Permeabilization solution (9:1 acetone to toluene (v/v))
- GUS Buffer (50mM NaH2PO4, 10mM β-mercaptoethanol, 1mM EDTA and 0.1% Triton X-100)
- 4-Nitrophenyl β-D-glucuronide (4-NPG) stock solution (10mg/ml in 50mM NaH2PO4)
- Stop Buffer (200mM Na2CO3)
Method
- Measure and record the OD600 of the cell culture
- Pellet 1mL of culture by centrifugation.
- Resuspend the pellet in 400μL of Suspension Solution.
- Add 25ul of permeabilization solution.
- Incubate for 30 to 60 minutes at 37°C
- Take 50μL of this cell suspension and add it to 200μL of GUS Buffer.
- Add 20μL of 4-NPG stock solution.
- Let the reaction run for 10-30 minutes.
- Add 200μL Stop Solution to halt the reaction.
- Centrifuge to pellet cell debris.
- Measure the OD405 of the stopped reaction.
Notes
- Use this one for E. coli.
Assay 2
Materials
- 1M Na2CO3
- 100mM Sodium Phosphate buffer (pH=7)
- 50mM NaH2PO4
- 100mM Na2HPO4
- 100mM EDTA
- 0.1% SDS (w/v in H2O)
- 4-Nitrophenyl β-D-glucuronide (4-NPG) stock solution (10mg/ml in 50mM NaH2PO4)
- β-mercaptoethanol
- Chloroform
- Triton X-100
Method
- 1. Grow culture until OD600 is between 0.6 and 1.0
- 2. DPrepare 10mL of GUS Buffer (measures 10 samples) by adding:
- 3mL of 100mM Na2HPO4
- 2mL of 100mM NaH2PO4
- 15μL 100mM EDTA
- 1.5μL Triton X-100
- 1μL β-mercaptoethanol
- 720μL H2O
- 3. Measure and record the OD600 of the cell culture.
- 4. Pellet 1.5 ml of overnight culture by centrifugation for 1 minute.
- 5. Resuspend in 1ml gus buffer.
- 6. Pellet again by centrifugation.
- 7. Resuspend in 450μL GUS buffer.
- 8. Add 25ul chloroform and 12.5μL 0.1% SDS.
- 9. Vortex to mix for 10 secs.
- 10. Incubate for 10 min in 37°C water bath.
- 11. Add 50ul of 4-NPG solution and start the timer.
- 12. Incubate for 30 minutes in 37°C water bath.
- 13. After 30 minutes add 250μL 1M Na2CO3 to stop the reaction.
- 9. Centrifuge the reaction for 1 minute at full speed.
- 10. Measure the OD405 of the supernatant.
Notes
Use this one for Lactobacillus spp.