Beauchamp:Lab Notebook

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Revision as of 17:10, 27 August 2010 by Michael S Beauchamp (Talk | contribs)
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Brain picture
Beauchamp Lab



Contents

General Notes

  1. How To Install Software and set up new computers
  2. How To order things for the lab

Subject Forms

  1. Information for Subjects

MRI

  1. Overview of fMRI Analysis
  2. Motion and Distortion Correction
  3. Finding Distances on the Surface
  4. Finding Closest node on the Surface
  5. Creating AFNI BRIKs from MR Data
  6. Preparation for Creating Cortical Surface Models
  7. Creating Cortical Surface Models
  8. Using Cortical Surface Models
  9. What If a Cortical Surface Model Exists Already
  10. What If Cortical Surface Model Looks Bad
  11. Creating Standardized Surface Models
  12. FreeSurfer Standard Surface Models
  13. Creating Volume Average Datasets with AFNI
  14. Processing Diffusion Tensor Imaging Data
  15. Automatic VOI Initialization for Interactive Tractography
  16. Deterministic Tractography Constrained by Image Masks
  17. AFNI
  18. SUMA
  19. Free Surfer
  20. Caret
  21. Scanner Stimulus and Eye Tracker Setup
  22. Retinotopic Mapping
  23. AFNI Atlas Values
  24. Tactile Experiment Notes
  25. MVPA Notes
  26. RealTimefMRI
  27. Notes on analyzing MRI data (old)

TMS/TMS+MRI

  1. Notes on TMS


Electrophysiology/Electrophysiology+MRI

  1. Electrode Localization and Naming
  2. Electrophysiology Protocols
  3. Analyzing ECoG data (by Adam Burch)


Psychophysics

  1. New Auditory Tactile Experiment
  2. d' (d-prime) Analysis
  3. Race Model Analysis

Misc. Experiment Notes

  1. McGurk Stimuli
  2. Autism Data
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