Banta:Publications

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'''Publications (44 Total)'''
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'''Publications (49 Total)'''
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'''Columbia University''' (33 Total)
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'''Columbia University''' (38 Total)
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Campbell, E., Chuang, S., and Banta, S. (2013) “Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily” Protein Engineering, Design and Selection (In Press).
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<biblio>
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Campbell-PEDS-2013 pmid=23175796
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</biblio>
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Shur, O., and Banta, S. (2013) “Rearranging and concatenating a native RTX domain to understand sequence modularity” Protein Engineering, Design and Selection (In Press).
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<biblio>
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Shur-PEDS-2013 pmid=23173179
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</biblio>
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Sahin, A., Lin, W.-T., Khunjar, W.O., Chandran, K., Banta, S., and West, A.C., (2013) “Electrochemical reduction of nitrite to ammonia for use in a bioreactor” Journal of the Electrochemical Society 160(1) G19-G26.
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<biblio>
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Sahin-JES-2013
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</biblio>[[doi:10.1149/2.042301jes]]
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Khunjar, W.O., Sahin, A., West, A.C., Chandran, K., and Banta, S. (2012) “Biomass production from electricity using ammonia as an electron carrier in a reverse microbial fuel cell” PLoS ONE 7(9) e44846.
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<biblio>
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Khunjar-PLoSONE-2012 pmid=23028643
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</biblio>
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Felsovalyi, F., Patel, T., Mangiagalli, P., Kumar, S.K., and Banta, S. (2012) “Effect of thermal stability on protein adsorption to silica using homologous aldo-keto reductases” Protein Science 21(8) 1113-1125
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<biblio>
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Felsovalyi-ProtSci-2012 pmid=22619179
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</biblio>
Dooley, K., Kim, Y.H., Lu, H.D., Tu, R., and Banta, S. (2012) “Engineering of an Environmentally Responsive Beta Roll Peptide for Use as a Calcium-Dependent Cross-Linking Domain for Peptide Hydrogel Formation” Biomacromolecules 13(6) 1758-1764.  
Dooley, K., Kim, Y.H., Lu, H.D., Tu, R., and Banta, S. (2012) “Engineering of an Environmentally Responsive Beta Roll Peptide for Use as a Calcium-Dependent Cross-Linking Domain for Peptide Hydrogel Formation” Biomacromolecules 13(6) 1758-1764.  
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</biblio>
</biblio>
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Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS One 6(10) 1-9.  
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Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS ONE 6(10) e24948.  
<biblio>
<biblio>
Wu-PLoSOne-2011 pmid=22003385  
Wu-PLoSOne-2011 pmid=22003385  

Revision as of 10:37, 25 November 2012


Publications (49 Total)

Columbia University (38 Total)

Campbell, E., Chuang, S., and Banta, S. (2013) “Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily” Protein Engineering, Design and Selection (In Press).

  1. Campbell E, Chuang S, and Banta S. . pmid:23175796. PubMed HubMed [Campbell-PEDS-2013]

Shur, O., and Banta, S. (2013) “Rearranging and concatenating a native RTX domain to understand sequence modularity” Protein Engineering, Design and Selection (In Press).

  1. Shur O and Banta S. . pmid:23173179. PubMed HubMed [Shur-PEDS-2013]

Sahin, A., Lin, W.-T., Khunjar, W.O., Chandran, K., Banta, S., and West, A.C., (2013) “Electrochemical reduction of nitrite to ammonia for use in a bioreactor” Journal of the Electrochemical Society 160(1) G19-G26.

  1. [Sahin-JES-2013]
doi:10.1149/2.042301jes

Khunjar, W.O., Sahin, A., West, A.C., Chandran, K., and Banta, S. (2012) “Biomass production from electricity using ammonia as an electron carrier in a reverse microbial fuel cell” PLoS ONE 7(9) e44846.

  1. Khunjar WO, Sahin A, West AC, Chandran K, and Banta S. . pmid:23028643. PubMed HubMed [Khunjar-PLoSONE-2012]

Felsovalyi, F., Patel, T., Mangiagalli, P., Kumar, S.K., and Banta, S. (2012) “Effect of thermal stability on protein adsorption to silica using homologous aldo-keto reductases” Protein Science 21(8) 1113-1125

  1. Felsovalyi F, Patel T, Mangiagalli P, Kumar SK, and Banta S. . pmid:22619179. PubMed HubMed [Felsovalyi-ProtSci-2012]

Dooley, K., Kim, Y.H., Lu, H.D., Tu, R., and Banta, S. (2012) “Engineering of an Environmentally Responsive Beta Roll Peptide for Use as a Calcium-Dependent Cross-Linking Domain for Peptide Hydrogel Formation” Biomacromolecules 13(6) 1758-1764.

  1. Dooley K, Kim YH, Lu HD, Tu R, and Banta S. . pmid:22545587. PubMed HubMed [Dooley-Biomacromol-2012]

Campbell, E., Meredith, M., Minteer, S.D., and Banta, S., (2012) “An Enzymatic biofuel cell utilizing a biomimetic cofactor” Chemical Communications 48(13) 1898-1900.

  1. Campbell E, Meredith M, Minteer SD, and Banta S. . pmid:22227738. PubMed HubMed [Campbell-ChemComm-2012]

Holland, J.T., Lau, C., Brozik, S., Atanassov, P., and Banta, S., (2011) “Protein engineering of a glucose oxidase for direct electron transfer via targeted gold nanoparticle conjugation” Journal of the American Chemical Society 133(48) 19262-19265.

  1. Holland JT, Lau C, Brozik S, Atanassov P, and Banta S. . pmid:22050076. PubMed HubMed [Holland-JACS-2011]

Wu, J., Park, J.P., Dooley, K., Cropek, D.M., West, A.C. and Banta, S. (2011) “Rapid development of new protein biosensors utilizing peptides obtained via phage display” PLoS ONE 6(10) e24948.

  1. Wu J, Park JP, Dooley K, Cropek DM, West AC, and Banta S. . pmid:22003385. PubMed HubMed [Wu-PLoSOne-2011]

Sahin, A., Dooley, K., Cropek, D.M., West, A.C., and Banta, S. (2011) “A dual enzyme electrochemical assay for the detection of organophosphorus compounds using organophosphorus hydrolase and horseradish peroxidase” Sensors and Actuators B: Chemical 158(1) 353-360.

  1. [Sahin-SensActuatB-2011]
doi:10.1016/j.snb.2011.06.034

Felsovalyi, F., Mangiagalli, P., Bureau, C., Kumar, S.K., and Banta, S. (2011) “Reversibility of the Adsorption of Lysozyme on Silica” Langmuir 27(19) 11873-11882.

  1. Felsovalyi F, Mangiagalli P, Bureau C, Kumar SK, and Banta S. . pmid:21859112. PubMed HubMed [Felsovalyi-Langmuir-2011]

Szilvay, G.R., Brocato, S., Ivnitski, D., Li, C., De La Iglesia, P., Lau, C., Chi, E., Werner-Washburne, M., Banta, S., and Atanassov, P. (2011) “Engineering of a redox protein for DNA-directed assembly” Chemical Communications 47(26) 7464-7466.

  1. Szilvay GR, Brocato S, Ivnitski D, Li C, De La Iglesia P, Lau C, Chi E, Werner-Washburne M, Banta S, and Atanassov P. . pmid:21541425. PubMed HubMed [Szilvay-ChemComm-2011]

Kang, W.H., Simon, M.J., Gao, S., Banta, S., and Morrison III, B. (2011) “Attenuation of astrocyte activation by TAT mediated-delivery of a peptide JNK inhibitor” Journal of Neurotrauma 28(7) 1219-1228.

  1. Kang WH, Simon MJ, Gao S, Banta S, and Morrison B 3rd. . pmid:21510821. PubMed HubMed [Kang-JNeurotrauma-2011]

Shur, O., Wu, J., Cropek, D.M., and Banta, S. (2011) “Monitoring the conformational changes of an intrinsically disordered peptide using a Quartz Crystal Microbalance” Protein Science 20(5) 925-930.

  1. Shur O, Wu J, Cropek DM, and Banta S. . pmid:21416544. PubMed HubMed [Shur-ProtSci-2011]

Gao, S., Simon, M.J., Hue, C.D., Morrison III, B., and Banta, S. (2011) “An unusual cell penetrating peptide identified using a plasmid display-based functional selection platform” ACS Chemical Biology 6(5) 484-491 (Recommended by Faculty of 1000, Featured in Biotechniques News).

  1. Gao S, Simon MJ, Hue CD, Morrison B 3rd, and Banta S. . pmid:21291271. PubMed HubMed [Gao-ACSChemBiol-2011]

Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2011) “TAT is not capable of transcellular delivery across an intact endothelial monolayer in vitro” Annals of Biomedical Engineering 39(1) 394-401.

  1. Simon MJ, Kang WH, Gao S, Banta S, and Morrison B 3rd. . pmid:20737289. PubMed HubMed [Simon-AnnalBiomedEng-2011]

Glykys, D.J., Szilvay, G.R., Tortosa, P., Suarez Diez, M., Jaramillo, A., and Banta, S. (2011) “Pushing the limits of automatic computational protein design: computational design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold” Systems and Synthetic Biology 5(1-2) 45-58.

  1. Glykys DJ, Szilvay GR, Tortosa P, Suárez Diez M, Jaramillo A, and Banta S. . pmid:22654993. PubMed HubMed [Glykys-SystSynthBiol-2011]

Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2010) “A plasmid display platform for the selection of peptides exhibiting a functional cell-penetrating phenotype” Biotechnology Progress 26(6) 1796-1800.

  1. Gao S, Simon MJ, Morrison B 3rd, and Banta S. . pmid:20938973. PubMed HubMed [Gao-BiotechnolProg-2010]

Simon, M.J., Kang, W.H., Gao, S., Banta, S., and Morrison III, B. (2010) “Increased delivery of TAT across an endothelial monolayer following ischemic injury” Neuroscience Letters 486(1) 1-4.

  1. Simon MJ, Kang WH, Gao S, Banta S, and Morrison B 3rd. . pmid:20851169. PubMed HubMed [Simon-NeuroscieLett-2010]

Wu, J., Cropek, D.M., West, A.C. and Banta, S. (2010) “Development of a troponin I biosensor using a peptide obtained through phage display” Analytical Chemistry 82(19) 8235-8243.

  1. Wu J, Cropek DM, West AC, and Banta S. . pmid:20831206. PubMed HubMed [Wu-AnalChem-2010]

Campbell, E., Wheeldon, I.R., and Banta, S. (2010) “Broadening the cofactor specificity of a thermostable alcohol dehydrogenase using rational protein design introduces novel kinetic transient behavior” Biotechnology and Bioengineering 107(5) 763-774.

  1. Campbell E, Wheeldon IR, and Banta S. . pmid:20632378. PubMed HubMed [Campbell-BiotechnolBioeng-2010]

Lu, H.D., Wheeldon, I.R., and Banta, S. (2010) “Catalytic biomaterials: Engineering organophosphate hydrolase to form self-assembling enzymatic hydrogels” Protein Engineering, Design and Selection 23(7) 559-566.

  1. Lu HD, Wheeldon IR, and Banta S. . pmid:20457694. PubMed HubMed [Lu-PEDS-2010]

Blenner, M.A., Shur, O., Szilvay, G.R., Cropek, D.M., and Banta, S. (2010) “Calcium-induced folding of a beta roll motif requires C-terminal entropic stabilization” Journal of Molecular Biology 400(2) 244-256.

  1. Blenner MA, Shur O, Szilvay GR, Cropek DM, and Banta S. . pmid:20438736. PubMed HubMed [Blenner-JMolBiol-2010]

Banta, S., Wheeldon, I.R., and Blenner, M. (2010) “Protein engineering in the development of functional hydrogels” Annual Review of Biomedical Engineering 12 176-186.

  1. Banta S, Wheeldon IR, and Blenner M. . pmid:20420519. PubMed HubMed [Banta-AnnRevBME-2010]

Park, J.P., Cropek, D.M., and Banta, S. (2010) “High affinity peptides for the recognition of the heart disease biomarker troponin I using phage display” Biotechnology and Bioengineering 105(4) 678-686.

  1. Park JP, Cropek DM, and Banta S. . pmid:19891006. PubMed HubMed [Park-BiotechnolBioeng-2009]

Szilvay, G.R., Blenner, M.A., Shur, O., Cropek, D.M., and Banta, S. (2009) “A FRET-based method for probing the calcium-dependent conformational behavior of an intrinsically disordered beta roll domain from the Bordetella pertussis adenylate cyclase” Biochemistry 48(47) 11273-11282.

  1. Szilvay GR, Blenner MA, Shur O, Cropek DM, and Banta S. . pmid:19860484. PubMed HubMed [Szilvay-Biochem-2009]

Wheeldon, I.R., Campbell, E. and Banta, S. (2009) “A chimeric fusion protein engineered with disparate functionalities— enzymatic activity and self assembly” Journal of Molecular Biology 392(1) 129-142.

  1. Wheeldon IR, Campbell E, and Banta S. . pmid:19577577. PubMed HubMed [Wheeldon-JMolBiol-2009]

Chockalingam, K., Lu, H.D., and Banta, S. (2009) “Development of a bacteriophage-based system for the selection of short structured peptides” Analytical Biochemistry 388(1) 122-127.

  1. Chockalingam K, Lu HD, and Banta S. . pmid:19454225. PubMed HubMed [Chockalingam-AnalBiochem-2009]

Simon, M.J., Gao, S., Kang, W.H., Banta, S., and Morrison III, B. (2009) “TAT-mediated intracellular protein delivery to primary brain cells is dependent on glycosaminoglycan expression” Biotechnology and Bioengineering 104(1) 10-19.

  1. Simon MJ, Gao S, Kang WH, Banta S, and Morrison B 3rd. . pmid:19449355. PubMed HubMed [Simon-BiotechnolBioeng-2009]

Gao, S., Simon, M.J., Morrison III, B., and Banta, S. (2009) “Bifunctional chimeric fusion proteins engineered for DNA delivery: Optimization of the protein to DNA ratio” Biochimica et Biophysica Acta (General Subjects) 1790(3) 198-207.

  1. Gao S, Simon MJ, Morrison B 3rd, and Banta S. . pmid:19402206. PubMed HubMed [Gao-BBA-2009]

Glykys, D.J., and Banta, S. (2009) “Metabolic control analysis of an enzymatic biofuel cell” Biotechnology and Bioengineering 102(6) 1624-1635.

  1. Glykys DJ and Banta S. . pmid:19061242. PubMed HubMed [Glykys-BiotechnolBioeng-2009]

Chen, X.J., West, A.C., Cropek, D.M., and Banta, S. (2008) “Detection of the superoxide radical anion using various alkanethiol monolayers and immobilized cytochrome c” Analytical Chemistry 80(24) 9622-9629.

  1. Chen XJ, West AC, Cropek DM, and Banta S. . pmid:19072268. PubMed HubMed [Chen-AnalChem-2008]

Wheeldon, I.R., Gallaway, J.W., Calabrese Barton, S., and Banta, S. (2008) “Bioelectrocatalytic hydrogels from electron-conducting metallopolypeptides coassembled with bifunctional enzymatic building blocks” Proceedings of the National Academy of Sciences of the United States of America 105(40) 15275-15280.

  1. Wheeldon IR, Gallaway JW, Barton SC, and Banta S. . pmid:18824691. PubMed HubMed [Wheeldon-PNAS-2008]

Blenner M.A., and Banta, S. (2008) “Characterization of the 4D5Flu single chain antibody with a stimulus-responsive elastin-like peptide linker: A potential reporter of peptide linker conformation” Protein Science 17(3) 527-536.

  1. Blenner MA and Banta S. . pmid:18218715. PubMed HubMed [Blenner-ProtSci-2008]

Gallaway, J., Wheeldon, I.R., Rincon, R., Atanassov, P., Banta, S., and Calabrese Barton, S. (2008) “Oxygen-Reducing Enzyme Cathodes Produced from SLAC, a Small Laccase from Streptomyces coelicolor, For Use at Neutral pH” Biosensors and Bioelectronics 23(8) 1229-1235.

  1. Gallaway J, Wheeldon I, Rincon R, Atanassov P, Banta S, and Barton SC. . pmid:18096378. PubMed HubMed [Gallaway-BiosensBioelectron-2008]

Wheeldon, I.R., Calabrese Barton, S., and Banta, S. (2007) “Bioactive Proteinaceous Hydrogels from Designed Bi-functional Building Blocks” Biomacromolecules 8(10) 2990-2994.

  1. Wheeldon IR, Barton SC, and Banta S. . pmid:17887795. PubMed HubMed [Wheeldon-Biomacromol-2007]

Chockalingam, K., Blenner, M., and Banta, S. (2007) “Design and Application of Stimulus-Responsive Peptide Systems” Protein Engineering, Design and Selection 20(4) 155-161.

  1. Chockalingam K, Blenner M, and Banta S. . pmid:17376876. PubMed HubMed [Chockalingam-PEDS-2007]

Banta, S.*, Megeed, Z.*, Casali, M., Rege, K., and Yarmush, M.L. (2007) “Engineering Protein and Peptide Building Blocks for Nanotechnology” Journal of Nanoscience and Nanotechnology 7(2) 387-401 (*co-first authors).

  1. Banta S, Megeed Z, Casali M, Rege K, and Yarmush ML. . pmid:17450770. PubMed HubMed [Casali-JNanosciNanotechnol-2007]


Harvard University (6 Total)

Casali, M., Banta, S., Zambonelli, C., Megeed, Z., and Yarmush, M.L. (2008) ”Site-directed mutagenesis of the hinge peptide from the Hemagglutinin protein: Enhancement of the pH-responsive conformational change” Protein Engineering, Design and Selection 21(6) 395-404.

  1. Casali M, Banta S, Zambonelli C, Megeed Z, and Yarmush ML. . pmid:18411225. PubMed HubMed [Casali-PEDS-2008]

Banta, S.*, Vemula, M.*, Yokoyama, T., Jayaraman, A., Berthiaume, F., and Yarmush, M.L. (2007) “Contribution of Gene Expression to Metabolic Fluxes in Hypermetabolic Livers Induced Through Burn Injury and Cecal Ligation and Puncture in Rats” Biotechnology and Bioengineering 97(1) 118-137 (*co-first authors) (Featured in Editor’s Spotlight ).

  1. Banta S, Vemula M, Yokoyama T, Jayaraman A, Berthiaume F, and Yarmush ML. . pmid:17009336. PubMed HubMed [Banta-BiotechnolBioeng-2007]

Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2005) “Effects of Dehydroepiandrosterone administration on rat hepatic metabolism following thermal injury” Journal of Surgical Research 127(2) 93-105.

  1. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. . pmid:15882877. PubMed HubMed [Banta-JSurgRes-2005]

Yokoyama, T., Banta, S., Berthiaume, F., Nagrath, D., Tompkins, R.G., and Yarmush, M.L. (2005) “Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model” Metabolic Engineering 7(2) 88-103.

  1. Yokoyama T, Banta S, Berthiaume F, Nagrath D, Tompkins RG, and Yarmush ML. . pmid:15781418. PubMed HubMed [Yokoyama-MetabolEng-2005]

Banta, S., Yokoyama, T., Berthiaume, F., and Yarmush, M.L. (2004) “Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation” Biotechnology and Bioengineering 88(5) 613-629.

  1. Banta S, Yokoyama T, Berthiaume F, and Yarmush ML. . pmid:15470703. PubMed HubMed [Banta-BiotechnolBioeng-2004]

Yarmush, M.L. and Banta, S. (2003) “Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease” Annual Review of Biomedical Engineering 5 349-381.

  1. Yarmush ML and Banta S. . pmid:14527316. PubMed HubMed [Yarmush-AnnRevBME-2003]


Rutgers University (5 Total)

Sanli, G., Banta, S., Anderson, S., and Blaber, M. (2004) “Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase” Protein Science 13(2) 504-512.

  1. Sanli G, Banta S, Anderson S, and Blaber M. . pmid:14718658. PubMed HubMed [Sanli-ProtSci-2004]

Banta, S., Boston, M., Jarnagin, A., and Anderson, S. (2002) “Mathematical modeling of in vitro enzymatic production of 2-keto-L-gulonic acid using NAD(H) or NADP(H) as cofactors” Metabolic Engineering 4(4) 273-284.

  1. Banta S, Boston M, Jarnagin A, and Anderson S. . pmid:12646322. PubMed HubMed [Banta-MetabolEng-2002]

Banta, S., and Anderson, S. (2002) “Verification of a novel NADH-binding motif: Combinatorial mutagenesis of three amino acids in the cofactor binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase” Journal of Molecular Evolution 55(6) 623-631.

  1. Banta S and Anderson S. . pmid:12486521. PubMed HubMed [Banta-JMolEvol-2002]

Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Optimizing an artificial metabolic pathway: Engineering the cofactor specificity of Corynebacterium 2,5-diketo-D-gluconic acid reductase for use in vitamin C biosynthesis” Biochemistry 41(20) 6226-6236.

  1. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. . pmid:12009883. PubMed HubMed [Banta-Biochem-2002]

Banta, S., Swanson, B.A., Wu, S., Jarnagin, A., and Anderson, S. (2002) “Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-D-gluconic acid reductase A” Protein Engineering 15(2) 131-140. (Featured on cover)

  1. Banta S, Swanson BA, Wu S, Jarnagin A, and Anderson S. . pmid:11917149. PubMed HubMed [Banta-PEDS-2002]


Book Chapters and Other Articles

Atanassov, P., Apblett, C., Banta, S. Brozik, S., Calabrese Barton, S., Cooney, M., Liaw, B. Y., Mukerjee, S., and Minteer, S.D. (2007) "Enzymatic Biofuel Cells" Interface 16(2) 28-31

Banta, S. (2006) "Protein Engineering" The Biomedical Engineering Handbook, 3rd Ed, Edited by J.D. Bronzino, CRC Press, Boca Raton, Florida.

Banta, S. and Zupke, C. (2006) "Metabolic Engineering" The Biomedical Engineering Handbook, 3rd Ed, Edited by J.D. Bronzino, CRC Press, Boca Raton, Florida.


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