BYU iGEM/Notebook/19 January 2011: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
 
(10 intermediate revisions by 4 users not shown)
Line 7: Line 7:


Started research in earnest for colon cancer biomarkers that will be useful in our project.
Started research in earnest for colon cancer biomarkers that will be useful in our project.
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WN2-4NRMDCT-3&_user=456938&_coverDate=12%2F31%2F2007&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1613028817&_rerunOrigin=google&_acct=C000021830&_version=1&_urlVersion=0&_userid=456938&md5=6434a6e2cbf35e44e5540c2b1799759c&searchtype=a ROS are decreased in cancerous cells]
[http://www.ncbi.nlm.nih.gov/pubmed/1331990 ROS are <i>increased</i> in CRC]
ROS-sensing transcriptional regulators already in E. Coli are OxyR, SoxR, and FNR.  These could potentially be used to detect different concentrations of ROS.




Line 13: Line 20:
[http://en.wikipedia.org/wiki/Carcinoembryonic_antigen Carcinoembryonic antigen]
[http://en.wikipedia.org/wiki/Carcinoembryonic_antigen Carcinoembryonic antigen]


[http://cebp.aacrjournals.org/content/12/10/1095.full.pdf+html Detection of Gastric Cancer and Premalignant Lesions by Novel Marker Glycoprotein 87 Using Monoclonal Antibody Adnab-9]
[http://cebp.aacrjournals.org/content/12/10/1095.full.pdf+html Detection of Glycoprotein 87 Using Monoclonal Antibody Adnab-9]
 
[http://cebp.aacrjournals.org/content/17/3/543.full.pdf+html Consistently Reported Candidate Biomarkers - Check last pages for lists of genes/proteins]
 
[http://www.aolnews.com/2010/03/22/scientists-find-first-ever-colon-cancer-biomarkers/ TFF<sub>3</sub> and GDF<sub>15</sub>]
 
 
 
===Goals for Next Few Weeks===
Subjects to Study:
Circuit design
Directed evolution
Mathematical modeling
Colon cancer biology basics
Other tools that will be useful.
 
Professors to give lectures:
Dr. Clement
Dr. Grose
Dr. O'Neil
Dr. Griffitts
 


[http://cebp.aacrjournals.org/content/17/3/543.full.pdf+html Meta-analysis of Colorectal Cancer Gene Expression Profiling Studies Identifies Consistently Reported Candidate Biomarkers]
----
[[../14_January_2011|Previous]] [[../21_January_2011|Next]]

Latest revision as of 14:51, 2 February 2011

19 January 2011

Proofread pamphlet text and plan to take pictures on Friday. Friday afternoon, Addison and his friend will work on the layout.


Started research in earnest for colon cancer biomarkers that will be useful in our project.


ROS are decreased in cancerous cells

ROS are increased in CRC

ROS-sensing transcriptional regulators already in E. Coli are OxyR, SoxR, and FNR. These could potentially be used to detect different concentrations of ROS.


Biomarkers Unique to Colon Cancer

Carcinoembryonic antigen

Detection of Glycoprotein 87 Using Monoclonal Antibody Adnab-9

Consistently Reported Candidate Biomarkers - Check last pages for lists of genes/proteins

TFF3 and GDF15


Goals for Next Few Weeks

Subjects to Study: Circuit design Directed evolution Mathematical modeling Colon cancer biology basics Other tools that will be useful.

Professors to give lectures: Dr. Clement Dr. Grose Dr. O'Neil Dr. Griffitts



[[../14_January_2011|Previous]] [[../21_January_2011|Next]]