BYU iGEM/Archive

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(OxyR_Peroxide)
Current revision (14:54, 20 July 2011) (view source)
(OxyR_Peroxide)
 
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Redox sensing by prokaryotic transcription factors. [http://www.sciencedirect.com/science/article/pii/S0006295299002890#toc1]
Redox sensing by prokaryotic transcription factors. [http://www.sciencedirect.com/science/article/pii/S0006295299002890#toc1]
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===OxyR_Binding===
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Computation-Directed Identification of OxyR DNA Binding Sites in Escherichia coli. [http://jb.asm.org/cgi/content/full/183/15/4571]
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===OxyR_End===
Sequence Data
Sequence Data

Current revision

Contents

Parts Database

[iGEM Biological Parts Database]

Articles

OxyR_Peroxide

Regulation of the OxyR transcription factor by hydrogen peroxide and the cellular thiol—disulfide status. [1]

Redox sensing by prokaryotic transcription factors. [2]

OxyR_Binding

Computation-Directed Identification of OxyR DNA Binding Sites in Escherichia coli. [3]

OxyR_End

Sequence Data

OxyR Binding domain on the mnth gene

Image:MNTH Gene binding site.jpeg

Site 1: TTTTCGTAGTCATAATCCTGGTCTATCAGAGAAATCA Source: [4]

Site 2: CTATCAGAGAAATCACCACAATCCATTTAAATGAATT Source: [5]

SoxR Binding domain on the SoxS gene

Image:SoxR Gene biniding domain.jpeg

Site 1: AATCGCTTTACCTCAAGTTAACTTGAGGAATTATACTCC [6]

E. coli Colon cancer detector

Thermosensors

That paper that Dr. Griffitts suggested

PDF with primer sequences

PDF with ΔTRS mutation sequences

Thermoswitch Sequence

Multiple Cloning Site Map

Click image to enlarge.
Click image to enlarge.

Useful ROS Transcription factor articles

Ecocyc.org (anything you want to know about E. coli

SoxR Sequence Info at NCBI

OxyR Sequence Info at NCBI

Redox-operated genetic switches: the SoxR and OxyR transcription factors (Review)

Techniques to isolate O2-sensitive proteins: [4Fe-4S-FNR as an example.]

A genetically encoded sensor for H2O2 with expanded dynamic range (OxyR with YFP)

Rapid in vivo screening system for anti-oxidant activity using bacterial redox sensor strains.

Cellular Defenses against Superoxide and Hydrogen Peroxide

AND Gate Articles

Logical "And" switch part from iGEM registry

Other Colon Cancer Articles

Detection of Gastric Cancer and Premalignant Lesions by Novel Marker Glycoprotein 87 Using Monoclonal Antibody Adnab-9

Colon Cancer biomarker (Lgr5 protein)

Redox signaling and gene control in the Escherichia coli soxRS oxidative stress regulon - A review

The Universal Character of the Tumor-Associated Antigen Survivin

Biomarkers for Early Detection of Colon Cancer

OxyR and Soxr Transcription Factors

Biomarkers

Parts that activate translation at 37°C -- for more parts, change the final 2 in URL to 3 or 9

Bio Thermometer 1 (youTube video)

Bio Thermometer 2

Carcinoembryonic antigen

Prostate-specific antigen

ROS is decreased in cancerous cells

Toolbox

Synthetic Biology Tools

Synthetic Biology and Engineering Rules

Synthetic Gene Circuit

Directed Evolution of a Genetic Circuit

Microbial Metabolism

Mathematical Modeling

Biology by Design

Inversion Recombinase Mechanisms

Design and Construction of a Double Inversion Recombination Switch for Heritable Sequential Genetic Memory

Schools for Synthetic Biology [7]

Potential Mechanisms

Personal tools