BME103 s2013:T900 Group7: Difference between revisions
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'''Experimenting With the Connections'''<br> | '''Experimenting With the Connections'''<br> | ||
Part 1 of the open PCR machine is the heating lid with a heating plate. This part heats the top part of the test tube as well as prevents heat from escaping. If this part doesn't work heat is likely to escape and the test tubes will not likely heat to the optimal temperature | |||
Part 2 is the test tube rack. This part hold the test tubes in place and acts as the main heating element for the test tubes. If this part does not work the test tubes will not heat to the optimal level | |||
Part 3 is a cable between the circuit board and the LCD display. If this connection fails the LCD will not function. | |||
Part 4 is a fan within the system. This part sucks the hot air out from the inside of the machine and prevents the system from overheating. | |||
Part 6 is a white wire between the circuit board and the rack. This wire is connected to a temperature sensor. Unplugging this wire will disable the temperature reading on the LCD display. <br> | |||
'''Test Run''' | '''Test Run''' | ||
On March 4, 2013 our PCR machine was first tested. We used machine "10" and downloaded the open PCR software on a mac laptop. The software did not download properly on my pc laptop. The system test ran normal without any issues. The time estimation on the software is not 100% accurate. <br> | |||
Revision as of 20:53, 25 March 2013
BME 103 Spring 2013 | Home People Lab Write-Up 1 Lab Write-Up 2 Lab Write-Up 3 Course Logistics For Instructors Photos Wiki Editing Help | ||||||||||||||
LAB 1 WRITE-UPInitial Machine Testing[[|thumb|right|1600x1250x|]]
Part 1 of the open PCR machine is the heating lid with a heating plate. This part heats the top part of the test tube as well as prevents heat from escaping. If this part doesn't work heat is likely to escape and the test tubes will not likely heat to the optimal temperature Part 2 is the test tube rack. This part hold the test tubes in place and acts as the main heating element for the test tubes. If this part does not work the test tubes will not heat to the optimal level Part 3 is a cable between the circuit board and the LCD display. If this connection fails the LCD will not function. Part 4 is a fan within the system. This part sucks the hot air out from the inside of the machine and prevents the system from overheating. Part 6 is a white wire between the circuit board and the rack. This wire is connected to a temperature sensor. Unplugging this wire will disable the temperature reading on the LCD display.
ProtocolsThermal Cycler Program
Each cycle consists of initialization, denaturation, annealing, and extension. The denaturation step is when the DNA is heated to a point at which the DNA template begins to melt, which leads to the double-stranded DNA coming apart into two single strands. Then the machine is cooled for the annealing step, which is when the primers attach to their respective sites on the single stranded DNA and begins the DNA formation. The fourth step, extension, takes place at a warmer temperature than annealing, but cooler than denaturation, and consists of the elongation of the DNA strands.
DNA Sample Set-up Procedure
PCR Reaction Mix One must create a PCR reaction mix, in order to do this groups are presented with 8 tubes, which will be filled with 25μL of the following:
DNA/ primer mix One must create DNA/ primer mix, in order to do this groups are presented with 8 tubes, which will be filled with 25μL of the following:
Research and DevelopmentSpecific Cancer Marker Detection - The Underlying Technology In order for a PCR machine to function in a way that is scientifically efficient, the machine must go through three different phases. It must go from 95ᵒC, to 57ᵒC, to 72ᵒC, and then repeat this cycle thirty times. At each stage, a microbiological change in the DNA occurrs. (BONUS points: Use a program like Powerpoint, Word, Illustrator, Microsoft Paint, etc. to illustrate how primers bind to the cancer DNA template, and how Taq polymerases amplify the DNA. Screen-captures from the OpenPCR tutorial might be useful. Be sure to credit the source if you borrow images.)
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