BME103:T930 Group 2 l2: Difference between revisions

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'''Background on Disease Markers'''
'''Background on Disease Markers'''
* Sample A


<!--- A description of the diseases and their associated SNP's (include the database reference number and web link) --->
[[Sickle Cell Anemia]]
 
rs35685286 [Homo sapiens]
 
GGATGAAGTTGGTGGT--GAGGCCCTGG[A/G]CAGGTTGGTA--TCAAGGTTACAAGAC
 
Chromosome 11- single nucleotide variation


http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=35685286






'''Primer Design'''
* Sample B


[[Sickle Cell Anemia]]
[[Sickle Cell Anemia]]


rs35685286 [Homo sapiens]
rs34430836 [Homo sapiens]


GGATGAAGTTGGTGGT--GAGGCCCTGG[A/G]CAGGTTGGTA--TCAAGGTTACAAGAC
AGGTGCTAGGTGCCTT--TAGTGATGGC[C/G]TGGCTCACCT--GGACAACCTCAAGGG


Chromosome 11- single nucleotide variation
Chromosome 11- single nucleotide variation


Primer--CTCCGGGACCTGTCCAACCAT
http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=34430836
 


Reverse Primer-- GAGGCCCTGGACAGGTTGGTA
'''Primer Design'''


http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=35685286
* Sample A


''rs35685286 [Homo sapiens]''


Primer--CTCCGGGACCTGTCCAACCAT


Reverse Primer-- GAGGCCCTGGACAGGTTGGTA


[[Sickle Cell Anemia]]


rs34430836 [Homo sapiens]


AGGTGCTAGGTGCCTT--TAGTGATGGC[C/G]TGGCTCACCT--GGACAACCTCAAGGG
* Sample B


Chromosome 11- single nucleotide variation
''rs34430836 [Homo sapiens]''


Primer—ATCACTACCGGACCGAGTGGA
Primer—ATCACTACCGGACCGAGTGGA


Reverse Primer—TAGTGATGGCCTGGCTCACCT
Reverse Primer—TAGTGATGGCCTGGCTCACCT
http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=34430836





Revision as of 19:55, 27 November 2012

BME 103 Fall 2012 Home
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Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
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OUR TEAM

Ryan Sullivan
Research Development Scientist
Miriam Y Acosta
PCR Machine Engineer
Ryan Keeney
PCR Machine Engineer
Juliana Ramos
Experimental Protocol Planner
Aaron Cornejo
Experimental Protocol Planner

LAB 2 WRITE-UP

Thermal Cycler Engineering

Our re-design is based upon the Open PCR system originally designed by Josh Perfetto and Tito Jankowski.


System Design


Key Features


Instructions





Protocols

Materials

Supplied in the Kit Amount
Open PCR Machine 1
10 μM Forward Primer 16.0 μL
10 μM Reverse Primer 16.0 μL
GoTaq Master Mix 800.0 μL
dH2O 764.8 μL
Tubes 16
Fluorimeter 1
Teflon Glass Slides 16
Alan Wrench 1
Operations Manual 1
Supplied by User Amount
Screwdriver 1
Template DNA (20ng) 3.2 μL
Micro-Pipetter 1
Camera Phone 1


PCR Protocol



DNA Measurement Protocol

Research and Development

Background on Disease Markers

  • Sample A

Sickle Cell Anemia

rs35685286 [Homo sapiens]

GGATGAAGTTGGTGGT--GAGGCCCTGG[A/G]CAGGTTGGTA--TCAAGGTTACAAGAC

Chromosome 11- single nucleotide variation

http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=35685286


  • Sample B

Sickle Cell Anemia

rs34430836 [Homo sapiens]

AGGTGCTAGGTGCCTT--TAGTGATGGC[C/G]TGGCTCACCT--GGACAACCTCAAGGG

Chromosome 11- single nucleotide variation

http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=34430836


Primer Design

  • Sample A

rs35685286 [Homo sapiens]

Primer--CTCCGGGACCTGTCCAACCAT

Reverse Primer-- GAGGCCCTGGACAGGTTGGTA


  • Sample B

rs34430836 [Homo sapiens]

Primer—ATCACTACCGGACCGAGTGGA

Reverse Primer—TAGTGATGGCCTGGCTCACCT


Illustration