BME103:T930 Group 17 - Revision history

Kaleia Kramer: /* Results */

Kaleia Kramer — Thu, 15 Nov 2012 14:39:35 GMT

Results

←Older revision		Revision as of 14:39, 15 November 2012
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-	"Supporting Analysis''' <br>	+	'''Supporting Analysis''' <br>
	{\| {{table}}		{\| {{table}}
	\|- style="background:#f0f0f0;"		\|- style="background:#f0f0f0;"

Carson Bridgers: /* OUR TEAM */

Carson Bridgers — Thu, 15 Nov 2012 07:40:49 GMT

OUR TEAM

←Older revision		Revision as of 07:40, 15 November 2012
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	\|- valign="top"		\|- valign="top"
	\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]		\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
-	\| [[~~Image:~~Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]	+	\| [[Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]		\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]

Carson Bridgers: /* OUR TEAM */

Carson Bridgers — Thu, 15 Nov 2012 07:40:35 GMT

OUR TEAM

←Older revision		Revision as of 07:40, 15 November 2012
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	{\| style="wikitable" width="700px"		{\| style="wikitable" width="700px"
	\|- valign="top"		\|- valign="top"
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]	+	\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]	+	\| [[Image:Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]		\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]

Carson Bridgers: /* OUR TEAM */

Carson Bridgers — Thu, 15 Nov 2012 07:36:52 GMT

OUR TEAM

←Older revision		Revision as of 07:36, 15 November 2012
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	\| [[Image:BME103student.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]		\| [[Image:BME103student.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
	\| [[Image:BME103student.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]		\| [[Image:BME103student.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]	+	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]
	\|}		\|}

Carson Bridgers: /* Research and Development */

Carson Bridgers — Thu, 15 Nov 2012 07:34:20 GMT

Research and Development

←Older revision		Revision as of 07:34, 15 November 2012
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	<br><br>		<br><br>

-	Bayes's Theorem:	+	'''Bayes's Theorem:'''

	p(A\|X) = [ p(X\|A)p(A)] / [ P(X\|A)p(A) + p(X\|~A)*p(~A) ]		p(A\|X) = [ p(X\|A)p(A)] / [ P(X\|A)p(A) + p(X\|~A)*p(~A) ]
	This theorem demonstrates the probability of some event happening based on a certain observation. A is the given phenomenon, while X is some observation of the phenomenon. In our case the phenomenon was either positive for cancer or negative for cancer and the observation of the phenomenon was weather it was positive or negative.		This theorem demonstrates the probability of some event happening based on a certain observation. A is the given phenomenon, while X is some observation of the phenomenon. In our case the phenomenon was either positive for cancer or negative for cancer and the observation of the phenomenon was weather it was positive or negative.
	Therefore, we had two equations derived from this model:		Therefore, we had two equations derived from this model:
		+
	PPV = TP/(TP+FP)		PPV = TP/(TP+FP)
	PPV is positive prediction value		PPV is positive prediction value

Carson Bridgers: /* Research and Development */

Carson Bridgers — Thu, 15 Nov 2012 07:33:48 GMT

Research and Development

←Older revision		Revision as of 07:33, 15 November 2012
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	<br><br>		<br><br>
		+
		+	Bayes's Theorem:
		+
		+	p(A\|X) = [ p(X\|A)p(A)] / [ P(X\|A)p(A) + p(X\|~A)*p(~A) ]
		+	This theorem demonstrates the probability of some event happening based on a certain observation. A is the given phenomenon, while X is some observation of the phenomenon. In our case the phenomenon was either positive for cancer or negative for cancer and the observation of the phenomenon was weather it was positive or negative.
		+	Therefore, we had two equations derived from this model:
		+	PPV = TP/(TP+FP)
		+	PPV is positive prediction value
		+	TP is true positive
		+	FP is false positive
		+	This gives you the probability that someone actually does have cancer.
		+
		+	and
		+
		+	NPV = TN/(TN + FN)
		+	NPV is negative prediction value
		+	TN is true negative
		+	FN is false negative
		+	This gives you the probability that someone does not have cancer.

	== '''Results''' <br>==		== '''Results''' <br>==

Kaleia Kramer: /* LAB 1 WRITE-UP */

Kaleia Kramer — Thu, 15 Nov 2012 06:56:20 GMT

LAB 1 WRITE-UP

←Older revision		Revision as of 06:56, 15 November 2012
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	=LAB 1 WRITE-UP=		=LAB 1 WRITE-UP=
-	~~(Please finish by 11/7/2012)~~

	== '''The Original Design'''<br> ==		== '''The Original Design'''<br> ==

Kaleia Kramer: /* LAB 1 WRITE-UP */

Kaleia Kramer — Thu, 15 Nov 2012 06:55:22 GMT

LAB 1 WRITE-UP

←Older revision		Revision as of 06:55, 15 November 2012
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	'''This is the Sample Holder''' <br>		'''This is the Sample Holder''' <br>

-	In this image the top has been moved aside so that the sample holder is visible. The sample holder keeps the samples in place while the PCR machine cycles.	+	In this image the top has been moved aside so that the sample holder is visible. The sample holder keeps the samples in place while the PCR machine cycles. The heated lid tightens so that the inside of the lid will press against the samples without crushing them to ensure that they are heated quickly and evenly.

Kaleia Kramer: /* Results */

Kaleia Kramer — Thu, 15 Nov 2012 06:51:11 GMT

Results

←Older revision		Revision as of 06:51, 15 November 2012
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	== '''Results''' <br>==		== '''Results''' <br>==

-	[[Image:100MEDIA$IMAG0083.jpg\|150px\|thumb\|Water]]	+	[[Image:100MEDIA$IMAG0083.jpg\|150px\|thumb\|bottom\|Water]]

-	[[Image:100MEDIA$IMAG0085.jpg\|150px\|thumb\|Calf Thymus]]	+	[[Image:100MEDIA$IMAG0085.jpg\|150px\|thumb\|bottom\|Calf Thymus]]

Kaleia Kramer: /* Results */

Kaleia Kramer — Thu, 15 Nov 2012 06:50:38 GMT

Results

←Older revision		Revision as of 06:50, 15 November 2012
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	== '''Results''' <br>==		== '''Results''' <br>==

-	[[Image:100MEDIA$IMAG0083.jpg\|150px\|thumb~~\|right~~\|Water]]	+	[[Image:100MEDIA$IMAG0083.jpg\|150px\|thumb\|Water]]

-	[[Image:100MEDIA$IMAG0085.jpg\|150px\|thumb~~\|right~~\|Calf Thymus]]	+	[[Image:100MEDIA$IMAG0085.jpg\|150px\|thumb\|Calf Thymus]]

←Older revision		Revision as of 07:40, 15 November 2012
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	\|- valign="top"		\|- valign="top"
	\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]		\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
-	\| [[~~Image:~~Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]	+	\| [[Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]		\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]

←Older revision		Revision as of 07:40, 15 November 2012
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	{\| style="wikitable" width="700px"		{\| style="wikitable" width="700px"
	\|- valign="top"		\|- valign="top"
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]	+	\| [[Image:Doug Steinhauff.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]	+	\| [[Image:Image:CarsonBridgers.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]		\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]

←Older revision		Revision as of 07:36, 15 November 2012
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	\| [[Image:BME103student.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]		\| [[Image:BME103student.jpg\|100px\|thumb\| Doug Steinhauff (R&D Scientist)]]
	\| [[Image:BME103student.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]		\| [[Image:BME103student.jpg\|100px\|thumb\| Carson Bridgers (DNA Measurement Operator and PCR machine operator) ]]
-	\| [[Image:~~BME103student~~.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]	+	\| [[Image:399013 328732870488811 483210505 n.jpg\|100px\|thumb\| Kathleen Farrell (Protocol and Procedures)]]
	\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]		\| [[Image:385430_10150382756581863_296847512_n.jpg\|100px\|thumb\| Kaleia Kramer (ImageJ Software Processor and PCR machine operator)]]
	\|}		\|}