BME103:T930 Group 13: Difference between revisions

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Revision as of 12:23, 1 November 2012

BME 103 Fall 2012 Home
People
Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
Course Logistics For Instructors
Photos
Wiki Editing Help

OUR TEAM

Name: Pete Marple
Experimental Protocol Planner
Name: Michelle Lipowicz
Experimental Protocol Planner
Name: Allen Janis
R&D Scientist
Name: Ian Bainbridge
R&D Scientist
Name: Marcus Sansoni
Open PCR Machine Engineer
Name: Tyler Barnes
Open PCR Machine Engineer

LAB 1 WRITE-UP

(Please finish by 11/7/2012)

Initial Machine Testing

The Original Design

http://openwetware.org/images/4/41/PCR_Machine.png
The orignal machine design from the OpenPCR design team. Used as an afforable tool to amplify a DNA sequence using <A HREF=http://en.wikipedia.org/wiki/Polymerase_chain_reaction> Polymerase Chain Reaction </A>


Experimenting With the Connections

When we unplugged the LCD display from the circuit board, the machine the LCD display turned off.

When we unplugged the white wire that connects the circuit board to the main heating block, the machine the LCD displayed a reading of -40 degrees.

Test Run

(Write the date you first tested Open PCR and your experience(s) with the machine)




Protocols

Polymerase Chain Reaction



Reagent Volume
Template DNA (20 ng) .2 uL
10 uM forward primer 1.0 uL
10 uM reverse primer 1.0 uL
GoTaq master mix 50.0 uL
dH20 47.8 uL
Total Volume 100.0 uL


Patient #29341 is female at the age of 53.
Patient #23292 is male at the age of 56.


Flourimeter Measurements

(Add your work from Week 3, Part 2 here)




Research and Development

Specific Cancer Marker Detection - The Underlying Technology

(Add a write-up of the information discussed in Week 3's class)

(BONUS points: Use a program like Powerpoint, Word, Illustrator, Microsoft Paint, etc. to illustrate how primers bind to the cancer DNA template, and how Taq polymerases amplify the DNA. Screen-captures from the OpenPCR tutorial might be useful. Be sure to credit the source if you borrow images.)




Results

(Your group will add the results of your Fluorimeter measurements from Week 4 here)