BME100 s2015:Group8 9amL4: Difference between revisions

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{| style="wikitable" width="700px"
{| style="wikitable" width="700px"
|- valign="top"
|- valign="top"
| [[Image:BME103student.jpg|100px|thumb|Name: An Tran<br>Role(s)]]
| [[Image:Headshot-BME.jpg|100px|thumb|Name: An Tran<br>Role(s)]]
| [[Image:IMG_1858.jpg|100px|thumb|Name: Molly Golek<br>Role(s)]]
| [[Image:IMG_1858.jpg|100px|thumb|Name: Molly Golek<br>Role(s)]]
| [[Image:IMG_0035.jpg|100px|thumb|Name: Anthony Gambirazio<br>Role(s)]]
| [[Image:IMG_0035.jpg|100px|thumb|Name: Anthony Gambirazio<br>Role(s)]]
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| G8 N || Negative control || none
| G8 N || Negative control || none
|-
|-
| G8 1-1 || Patient 1, replicate 1 ||  
| G8 1-1 || Patient 1, replicate 1 || 74239
|-
|-
| G8 1-2 || Patient 1, replicate 2 ||  
| G8 1-2 || Patient 1, replicate 2 || 74239
|-
|-
| G8 1-3 || Patient 1, replicate 3 ||  
| G8 1-3 || Patient 1, replicate 3 || 74239
|-
|-
| G8 2-1 || Patient 2, replicate 1 ||  
| G8 2-1 || Patient 2, replicate 1 || 82959
|-
|-
| G8 2-2 || Patient 2, replicate 2 ||  
| G8 2-2 || Patient 2, replicate 2 || 82959
|-
|-
| G8 2-3 || Patient 2, replicate 3 ||  
| G8 2-3 || Patient 2, replicate 3 || 82959
|}
|}


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'''DNA Sample Set-up Procedure'''
'''DNA Sample Set-up Procedure'''
<!-- In your own words, write an easy-to-comprehend list of the steps your group took to set up the PCR reaction in the PCR reaction tubes. End with placing the tubes in to the thermal cycler. Do not copy-paste the instructions from the Workbook. That will be considered plagiarism. -->
<!-- In your own words, write an easy-to-comprehend list of the steps your group took to set up the PCR reaction in the PCR reaction tubes. End with placing the tubes in to the thermal cycler. Do not copy-paste the instructions from the Workbook. That will be considered plagiarism. -->
# Step 1
# Step 2
# Step 3...


# Acquire the DNA samples from the patients as well as PCR reaction mix
# Label all of the PCR tubes for all of the samples that will be tested
# Place a new pipette tip on the micropipette
# Take 50 microliters of the PCR reaction mix
# Transfer PCR reaction mix to the corresponding labeled empty PCR tube
# Discard the used pipette tip
# Put a new pipette tip on the micropipette
# Take 50 micro liters of patient DNA sample/primer corresponding to the label on the tube
# Transfer the patient DNA into the tube containing the PCR reaction mix
# Repeat steps 3 through 9 for all samples. Be sure to place the DNA in the correct labeled tubes
# Place the tubes in the thermal cycler.


'''OpenPCR program'''
'''OpenPCR program'''
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Number of Cycles: 35
Number of Cycles: 35


        Denature at 95°C for 30 seconds
  Denature at 95°C for 30 seconds


        Anneal at 57°C for 30 seconds
  Anneal at 57°C for 30 seconds


        Extend at 72°C for 30 seconds
  Extend at 72°C for 30 seconds


Final Step: 72°C for 2 minutes
Final Step: 72°C for 2 minutes

Revision as of 20:16, 31 March 2015

BME 100 Spring 2015 Home
People
Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: An Tran
Role(s)
Name: Molly Golek
Role(s)
Name: Anthony Gambirazio
Role(s)
Name: Austin Lehew
Role(s)
Name: Robert Culibrk
Role(s)

LAB 4 WRITE-UP

Protocol

Materials

  • Lab Coat
  • Disposable Gloves
  • PCR Reaction Mix, 8 tubes, 50 uL each: Mix contatins Taq DNA polymerase, MgCL2, and dNTP's
  • DNA/primer mix, 8 tubes, 50 uL each: Each mix contains a different template DNA. All tubes have the same forward primer and reverse primer
  • A strip of empty PCR tubes
  • Disposable pipette tips: only use each only once. Never re-use disposable pipette tips or samples will be cross-contaminated
  • Cup for discarded tips
  • Micropipettor
  • OpenPCR machines: shared by two groups


PCR Reaction Sample List

Tube Label PCR Reaction Sample Patient ID
G8 P Positive control none
G8 N Negative control none
G8 1-1 Patient 1, replicate 1 74239
G8 1-2 Patient 1, replicate 2 74239
G8 1-3 Patient 1, replicate 3 74239
G8 2-1 Patient 2, replicate 1 82959
G8 2-2 Patient 2, replicate 2 82959
G8 2-3 Patient 2, replicate 3 82959


DNA Sample Set-up Procedure

  1. Acquire the DNA samples from the patients as well as PCR reaction mix
  2. Label all of the PCR tubes for all of the samples that will be tested
  3. Place a new pipette tip on the micropipette
  4. Take 50 microliters of the PCR reaction mix
  5. Transfer PCR reaction mix to the corresponding labeled empty PCR tube
  6. Discard the used pipette tip
  7. Put a new pipette tip on the micropipette
  8. Take 50 micro liters of patient DNA sample/primer corresponding to the label on the tube
  9. Transfer the patient DNA into the tube containing the PCR reaction mix
  10. Repeat steps 3 through 9 for all samples. Be sure to place the DNA in the correct labeled tubes
  11. Place the tubes in the thermal cycler.

OpenPCR program


Heated Lid: 100°C

Initial Step: 95°C for 2 minutes

Number of Cycles: 35

 Denature at 95°C for 30 seconds
  Anneal at 57°C for 30 seconds
  Extend at 72°C for 30 seconds

Final Step: 72°C for 2 minutes

Final Hold: 4°C





Research and Development

PCR - The Underlying Technology