BME100 s2015:Group6 9amL5: Difference between revisions

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Revision as of 10:04, 1 April 2015

BME 100 Spring 2015 Home
People
Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: Sara Belko
Name: Luc Tieu
Name: Priscilla Delgado
Name: Al Imam
Name: Francisco Campa


LAB 5 WRITE-UP

Procedure

Smart Phone Camera Settings

  • Type of Smartphone: IPhone 6
    • Flash: Off
    • ISO setting: 8
    • White Balance: Automatic
    • Exposure: Automatic
    • Saturation: Automatic
    • Contrast: Automatic


Calibration

  • Open phone's camera
  • Place upright in the cradle provided
  • Adjust the distance from phone to the sample making sure the picture is in focus and the distance is greater than 4 cm away.
Name: Set Up


  • Distance between the smart phone cradle and drop = 4.1 cm


Solutions Used for Calibration

Name: Water
Name: O.25
Name: 0.5
Name: 1
Name: 2
Name: 5



Placing Samples onto the Fluorimeter

  • 1. Pipet 80 milliliters of SYBR Green I solution in the middle of the 2 circles farthest away from the camera.
  • 2. Pipet 80 milliliters of calibration solution onto the first drop.
  • 3. Make sure the slide is lite by the blue light.


Data Analysis

Representative Images of Negative and Positive Samples

Name: Negative Sample
Name: Positive Sample

Image J Values for All Calibrator Samples


Concentration Area Internal Density
.25 1488 69984
.5 1456 73079
1 1456 72004
2 1321 65740
5 1264 60354


Calibration curve


PCR Results Summary

  • Our positive control PCR result was 5 μg/mL
  • Our negative control PCR result was 0 μg/mL

Observed results

  • Patient 73039 : The sample did not contain the allele so it did not glow green. The sample was observed to be 0 μg/mL.
  • Patient 40429 : The sample did contain the allele so it glowed green. The sample was observed to be 2 μg/mL.

Conclusions

  • Patient 73039 : This patient does not have coronary artery disease.
  • Patient 40429 : This patient does have coronary artery disease.



SNP Information & Primer Design

Background: About the Disease SNP


Primer Design and Testing


Name: Nondieased
Name: Diseased