BME100 s2015:Group10 12pmL4: Difference between revisions

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*HEATED LID: 100°C
[[Image:PCR steps.jpg]]
*INITIAL STEP: 95°C for 2 minutes
*NUMBER OF CYCLES : 35
Denature at 95°C for 30 seconds, Anneak at 57°C for 30 seconds, and Extend at 72°C for 30 seconds.  
*FINAL STEP: 72°C for 2 minutes
*FINAL HOLD: 4°C
 





Revision as of 13:16, 25 March 2015

BME 100 Spring 2015 Home
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Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
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OUR TEAM

Name: Joseline Valenzuela
Experiment Procedure
Name: Itai Kreisler
Data Analysis
Name: Clayton Nunn
Role(s)
Name: Isaac Clouse
Data Analysis)

LAB 4 WRITE-UP

Protocol

Materials

  • Lab coat
  • Disposable gloves
  • PCR reaction mix, 8 tubes, 50 μL each
  • DNA/ primer mix, 8 tubes, 50 μL each
  • A strip of empty PCR tubes
  • Disposable pipette tips
  • Cup for discarded tips
  • micropipettor
  • OpenPCR machine


PCR Reaction Sample List

Tube Label PCR Reaction Sample Patient ID
G10 + Positive control none
G10 - Negative control none
G10 1-1 Patient 1, replicate 1 67713
G10 1-2 Patient 1, replicate 2 67713
G10 1-3 Patient 1, replicate 3 67713
G10 2-1 Patient 2, replicate 1 89702
G10 2-2 Patient 2, replicate 2 89702
G10 2-3 Patient 2, replicate 3 89702


DNA Sample Set-up Procedure

  1. Step 1
  2. Step 2
  3. Step 3...

OpenPCR program






Research and Development

PCR - The Underlying Technology

Denaturation: The DNA strands are heated to a high temperature of about 95C. This weakens the hydrogen bonds holding the double helix together, at which point the bonds become so weak, the strands physically separate. The base pairs will be exposed and the DNA is ready for primers to be attached.

Annealing: At a lower temperature, of about 55C, the primers are introduced into the mix. Since the DNA base pairs are exposed, the primers will be able to bind to specifically selected sites on the DNA. After this portion, the replication will begin.

Extension: DNA polymerase begins to line up the new base pairs at a temperature varying with the polymerase. After a period of time, the DNA will have been doubled. The previous three steps will be repeated amny times in order to amplify a single section of the DNA to be copied millions and millions of times.

Final Elongation: The DNA is put through one last extension to ensure all the strands have matching base pairs to form complete double helices.

Final Hold: The DNA is stored a cool temperature to prevent it from denaturing again.


Credit: http://en.wikipedia.org/wiki/Polymerase_chain_reaction#Procedure