BME100 f2014:Group16 L5: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
Line 70: Line 70:
# ''Place slide in the fluorimeter with the smooth side down hydrophobic side up''
# ''Place slide in the fluorimeter with the smooth side down hydrophobic side up''
# ''Adjust slide to the light shines between the dots on the slide''
# ''Adjust slide to the light shines between the dots on the slide''
# ''''
# ''Place 80 micro-mL of SYBR green 1 on slide between the middle dots''
# ''''
# ''Place 80 micro-mL of calibration on the sphere you already placed to a 160 micro-mL shpere''
# ''''
# ''Adjust the shpere placement for the light and phone distance in the holder''
# ''''
# ''Record Iphone distance''
# ''''
# ''Cover the assembly and make small adjustments''
# ''''
# ''Take a photo on delay and cover''
# ''''
# ''''
# ''''
# ''''

Revision as of 10:33, 29 October 2014

BME 100 Fall 2014 Home
People
Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: Christopher Saar
Protocol editer
image Source:smashbroslawlorigins.wikia.com
Name: Gurpaul Sidhu
Role(s): Wiki editor, researcher
Picture Source:www. shadyrecords.com/wp-content/uploads/2013/01/royce.jpg
Name: Emily Angeles Mancinas
Name: student
Name: student
Name: student


LAB 5 WRITE-UP

Procedure

Smart Phone Camera Settings

  • Type of Smartphone:
    • Flash: NO Flash
    • ISO setting:Standard Iphone settings
    • White Balance: Standard Iphone settings
    • Exposure: Standard Iphone settings
    • Saturation:Standard Iphone settings
    • Contrast:Standard Iphone settings


Calibration

  • Distance between the smart phone cradle and drop = 6.5 cm


Solutions Used for Calibration

Init. Conc. 2X Calf Thymus DNA (micrograms/mL) Vol. 2X DNA solution (micro-mL) Vol. SYBR GREEN 1 DYE (micro-mL) Final DNA Concentration STBR GREEN 1 Solution (Micrograms/mL)
5 80 80 row 2 cell 4
2 80 80 row 3 cell 4
1 80 80 row 1 cell 4
0.5 80 80 row 2 cell 4
0.25 80 80 row 3 cell 4
0 80 80 row 3 cell 4


Placing Samples onto the Fluorimeter

  1. Place fluorimeter on the table
  2. Place slide in the fluorimeter with the smooth side down hydrophobic side up
  3. Adjust slide to the light shines between the dots on the slide
  4. Place 80 micro-mL of SYBR green 1 on slide between the middle dots
  5. Place 80 micro-mL of calibration on the sphere you already placed to a 160 micro-mL shpere
  6. Adjust the shpere placement for the light and phone distance in the holder
  7. Record Iphone distance
  8. Cover the assembly and make small adjustments
  9. Take a photo on delay and cover
  10. '
  11. '
  12. '


Data Analysis

Representative Images of Negative and Positive Samples


Image J Values for All Calibrator Samples


TABLE GOES HERE


Calibration curve


PCR Results Summary

  • Our positive control PCR result was ____ μg/mL
  • Our negative control PCR result was ____ μg/mL

Observed results

  • Patient _____ :
  • Patient _____ :

Conclusions

  • Patient _____ :
  • Patient _____ :




SNP Information & Primer Design

Background: About the Disease SNP


Primer Design and Testing