BME100 f2014:Group13 L5: Difference between revisions

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==Procedure==
==Procedure==


'''Smart Phone Camera Settings'''<br>
'''Smart Phone Camera Settings'''<br><br>
<!-- The type of smart phone you used and how you adjusted the camera settings, if applicable. If you used more than one phone, make an additional list. -->
<!-- The type of smart phone you used and how you adjusted the camera settings, if applicable. If you used more than one phone, make an additional list. -->
* Type of Smartphone: Android S4
* Type of Smartphone: Android S4
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# Change the distance between the smartphone in its cradle and the first two rows of the slide so that it is as close as possible (but further the 4 cm away from the drop) without making the image blurry.
# Change the distance between the smartphone in its cradle and the first two rows of the slide so that it is as close as possible (but further the 4 cm away from the drop) without making the image blurry.
# Measure and record the distance from the smartphone in the cradle and the drop.
# Measure and record the distance from the smartphone in the cradle and the drop.
<br><br>
<br>


<!-- INSTRUCTIONS: Type the distance between your phone cradle and the drop after the equal sign. -->
<!-- INSTRUCTIONS: Type the distance between your phone cradle and the drop after the equal sign. -->

Revision as of 10:06, 29 October 2014

BME 100 Fall 2014 Home
People
Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: Katherine Salazar
Name: Micheal Nguyen
Name: Jacob Irwin
Name: Esteban Cruz
Name: Dalal Almuhaidib
Name: Nicholas Olivar


LAB 5 WRITE-UP

Procedure

Smart Phone Camera Settings

  • Type of Smartphone: Android S4
    • Flash: Inactivated
    • ISO setting:800
    • White Balance: Auto
    • Exposure: Highest Setting (+2.0)
    • Saturation: Highest Setting
    • Contrast:Lowest Setting


Calibration

  1. Adjust the smartphone camera settings to the qualifications above, if possible.
  2. Place the phone in the cradle at a right angle from the slide.
  3. Adjust the height of the fluorimeter using the plastic trays so that the phone takes is viewing the drop from the side.
  4. Change the distance between the smartphone in its cradle and the first two rows of the slide so that it is as close as possible (but further the 4 cm away from the drop) without making the image blurry.
  5. Measure and record the distance from the smartphone in the cradle and the drop.


  • Distance between the smart phone cradle and drop =


Solutions Used for Calibration

Initial Concentration of 2X Calf Thymus DNA solution (micrograms/mL) Volume of the 2X DNA solution (µL) Volume of the SYBR GREEN I Dye solution (µL) Final DNA concentration in SYBR Green I solution (µg/mL)
5 80 80 2.5
2 80 80 1
1 80 80 0.5
0.5 80 80 0.25
0.25 80 80 0.125
0 80 80 0



Placing Samples onto the Fluorimeter

  1. [Instructions: Step one, in your OWN words]
  2. [Instructions: Step two, in your own words]
  3. [Instructions: Step three, in your own words]
  4. [Instructions: Step etc., in your own words]


Data Analysis

Representative Images of Negative and Positive Samples


Image J Values for All Calibrator Samples


TABLE GOES HERE


Calibration curve


PCR Results Summary

  • Our positive control PCR result was ____ μg/mL
  • Our negative control PCR result was ____ μg/mL

Observed results

  • Patient _____ :
  • Patient _____ :

Conclusions

  • Patient _____ :
  • Patient _____ :




SNP Information & Primer Design

Background: About the Disease SNP


Primer Design and Testing