BME100 f2013:W1200 Group5 L6
BME 100 Fall 2013 | Home People Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3 Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6 Course Logistics For Instructors Photos Wiki Editing Help | |||||
OUR TEAMLAB 6 WRITE-UPComputer-Aided DesignTinkerCAD [Instructions: A short summary (up to five sentences) of the TinkerCAD tool and how you used it in lab on November 20th] [Instructions: Show an image of your TinkerCAD PCR tube design here]
Feature 1: Cancer SNP-Specific PrimersBackground on the cancer-associated mutation
How the primers work: The reverse primer will bind to a complementary cancer-SNP containing template that was taken from a patient sample. The reverse primer only binds to the complementary sequence if it 100% matches just as the forward primer will also bind to its complement given it matches 100%. When the primer does not match the sequence completely, it will not be replicated. This makes it so only the DNA with the cancer-associated SNP will be replicated and any DNA that has the non-cancer allele will not be replicated.
Feature 2: Consumables KitThe Eazee Baike PCR system comes complete with a micropipettor, pipettetips, PCR sample tubes, PCR mix, and primers. In addition to having all ingredients of the experiment readily available, the PCR tubes come pre-labeled and sorted which allows the user to begin the experiment immediately after opening the package. Other kits force the user to separate the tubes from large connected groups, down to a manageable size while also requiring the user to label the individual tubes. We find that pre-labeling and grouping the PCR tubes can save the user time and hassle.
Feature 3: PCR Machine Hardware[Instructions: IF your group has decided to redesign the PCR machine to address any major weakness discussed by your group or mentioned by others (see the Virtual Comment Board Powerpoint files on Blackboard, Lab Week 12) explain how in an additional paragraph.]
Feature 4: Fluorimeter Hardware[Instructions: IF your group has decided to redesign the fluorimeter to address any major weakness discussed by your group or mentioned by others (see the Virtual Comment Board Powerpoint files on Blackboard, Lab Week 12) explain how in an additional paragraph.]
Bonus Opportunity: What Bayesian Stats Imply About The BME100 Diagnostic Approach[Instructions: This section is OPTIONAL, and will get bonus points if answered thoroughly and correctly. Here is a chance to flex some intellectual muscle. In your own words, discuss what the results for calculations 3 and 4 imply about the reliability of CHEK2 PCR for predicting cancer. Please do NOT type the actual numerical values here. Just refer to them as being "less than one" or "very small." The instructors will ask you to submit your actual calculations via e-mail. We are doing so for the sake of academic integrity and to curb any temptation to cheat.] |