BIOL398-03/S13:Week 13
From OpenWetWare
This journal entry is due on Friday, April 19 at midnight PDT (Thursday night/Friday morning). NOTE new due date and that the server records the time as Eastern Daylight Time (EDT). Therefore, midnight will register as 03:00.
Individual Journal Assignment
- Store this journal entry as "username Week 13" (i.e., this is the text to place between the square brackets when you link to this page).
- Create the following set of links. (HINT: you can do all of this easily by adding them to your template and then using the template on your pages.)
- Link to your journal entry from your user page.
- Link back from your journal entry to your user page.
- Link to this assignment from your journal entry.
- Don't forget to add the "BIOL398-03/S13" category to the end of your wiki page.
Tasks
- Download the matlab files
- Open the estimation_driver script in matlab and run it.
- Paste the graphs of the individual genes into a powerpoint presentation.
- Upload your powerpoint to openwetware.
- Store your journal entry in the shared Class Journal Week 13 page. If this page does not exist yet, go ahead and create it (congratulations on getting in first :) )
- Link to your journal entry from your user page.
- Link back from the journal entry to your user page.
- Sign your portion of the journal with the standard wiki signature shortcut (
~~~~). - Add the "BIOL398-03/S13" category to the end of the wiki page (if someone has not already done so).
Reflection
Look over the excel workbook input file.
- How might you change the network to add more genes/transcription factors?
- How might you run a computer experiment to examine the deletion of a gene?
Return to the chemostat.
- In concept, without worrying about creating matlab code, how might you use the least squares technique to get parameters from the ter Schure et al experiments?
