BIOL368/F14:Chloe Jones Week 11: Difference between revisions

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#[http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37973/?keywords=Mycobacterium+tuberculosis+H37Rv&organism=&array=&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22 Cyclic di-GMP mediates Mycobacterium tuberculosis dormancy and pathogenecity]
#[http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37973/?keywords=Mycobacterium+tuberculosis+H37Rv&organism=&array=&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22 Cyclic di-GMP mediates Mycobacterium tuberculosis dormancy and pathogenecity]
#*[http://ac.els-cdn.com/S1472979213001625/1-s2.0-S1472979213001625-main.pdf?_tid=55036cd2-6536-11e4-89ed-00000aab0f27&acdnat=1415224655_0dc91226c31c26606f3ba3c5676c9339 Link to paper]
#*[http://ac.els-cdn.com/S1472979213001625/1-s2.0-S1472979213001625-main.pdf?_tid=55036cd2-6536-11e4-89ed-00000aab0f27&acdnat=1415224655_0dc91226c31c26606f3ba3c5676c9339 Link to paper]
#* This fourth article is not suitable because they only did duplicates for one condition and only one replicate for the other condition, instead of at least three replicates.  ''— [[User:Kam D. Dahlquist|Kam D. Dahlquist]] 17:41, 5 November 2014 (EST)''
#[http://www.ebi.ac.uk/arrayexpress/experiments/E-BUGS-65/?keywords=Staphylococcus+aureus+MRSA252&organism=&array=&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22 Global Network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus]
#[http://www.ebi.ac.uk/arrayexpress/experiments/E-BUGS-65/?keywords=Staphylococcus+aureus+MRSA252&organism=&array=&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22 Global Network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus]
#* [http://www.biomedcentral.com/content/pdf/1752-0509-5-68.pdf Link to paper]
#* [http://www.biomedcentral.com/content/pdf/1752-0509-5-68.pdf Link to paper]

Revision as of 15:41, 5 November 2014

Journal Club Article/Microarray Dataset Possibilities

  1. An Outbreak of Severe Infections with Community-Acquired MRSA Carrying the Panton-Valentine Leukocidin Following Vaccination
    • Link to paper
    • This first article is not suitable because it is not measuring gene expression (mRNA). Kam D. Dahlquist 17:30, 5 November 2014 (EST)
  2. Two Distinct Clones of Methicillin-Resistant Staphylococcus aureus (MRSA) with the Same USA300 Pulsed-Field Gel Electrophoresis Profile: a Potential Pitfall for Identification of USA300 Community-Associated MRSA
    • Link to paper
    • This second article is not suitable because it is not measuring gene expression (mRNA). Kam D. Dahlquist 17:33, 5 November 2014 (EST)
  3. Structural polymorphism in the promoter of pfmrp2 confers Plasmodium falciparum tolerance to quinoline drugs
    • Link to paper
    • This third article is not suitable because they only did duplicates instead of at least three replicates. Kam D. Dahlquist 17:38, 5 November 2014 (EST)
  4. Cyclic di-GMP mediates Mycobacterium tuberculosis dormancy and pathogenecity
    • Link to paper
    • This fourth article is not suitable because they only did duplicates for one condition and only one replicate for the other condition, instead of at least three replicates. Kam D. Dahlquist 17:41, 5 November 2014 (EST)
  5. Global Network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus