# Ashley Rhoades Week 9

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This is the data for the gene NSR1. | This is the data for the gene NSR1. | ||

- | Average at time 15: 1.2 | + | *Average at time 15: 1.2 |

- | P value: 0.0046 | + | **P value: 0.0046 |

- | Average at time 30: 1.98 | + | *Average at time 30: 1.98 |

- | P value: 0.0180 | + | **P value: 0.0180 |

- | Average at time 60: 1.96 | + | *Average at time 60: 1.96 |

- | P value: 0.0151 | + | **P value: 0.0151 |

- | Average at time 90: -0.75 | + | *Average at time 90: -0.75 |

- | P value: 0.0676 | + | **P value: 0.0676 |

+ | |||

+ | *Average at time 120: -0.63 | ||

+ | *P value: 0.1601 | ||

- | |||

- | |||

There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05. | There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05. | ||

## Current revision

## Contents |

## Week 9 Journal

### Part One

These are the number of genes that fall into each significance level for each time period.

- T15
- P<0.05 - 781
- P<0.01 - 218
- P< 0.001 - 21
- P<0.0001 - 1

- T30
- P<0.05 - 1539
- P<0.01 - 456
- P< 0.001 - 55
- P<0.0001 - 2

- T60
- P<0.05 - 1559
- P<0.01 - 384
- P< 0.001 - 51
- P<0.0001 - 6

- T90
- P<0.05 - 538
- P<0.01 - 129
- P< 0.001 - 9
- P<0.0001 - 1

- T120
- P<0.05 - 564
- P<0.01 - 114
- P< 0.001 - 16
- P<0.0001 - 5

### Part Two

These are the number of genes that fall under a p<0.05 significance threshold with the Bonferroni correction.

- T15: 1 value
- T30: 0
- T60: 2
- T90: 1
- T120: 0

### Part 3

These are the average log folds with significance p<0.05.

- T15
- Greater than zero: 437
- Less than zero: 771
- Greater than .25: 402
- Less than -.25: 256

- T30
- Greater than zero: 713
- Less than zero: 826
- Greater than .25: 673
- Less than -.25: 770

- T60
- Greater than zero: 760
- Less than zero: 799
- Greater than .25: 727
- Less than -.25 : 745

- T90
- Greater than zero: 319
- Less than zero: 219
- Greater than .25: 277
- Less than -.25: 194

- T120
- Greater than zero: 332
- Less than zero: 232
- Greater than .25: 245
- Less than -.25: 170

### Part 4

This is the data for the gene NSR1.

- Average at time 15: 1.2
- P value: 0.0046

- Average at time 30: 1.98
- P value: 0.0180

- Average at time 60: 1.96
- P value: 0.0151

- Average at time 90: -0.75
- P value: 0.0676

- Average at time 120: -0.63
- P value: 0.1601

There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05.

### Part 5

The gene with the smallest p value is YPR059C with p=4.73816675697583E-06. Unfortunately in the database little to nothing is known about this gene. The only information available was that it most likely does not code for a protein.

## Survey of Biomathematics

- Ashley Rhoades
- Loyola Marymount University
- Email me through OpenWetWare
- BIOL398-03/S13