Ashley Rhoades Week 9

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(Part Two: fixing format)
(Part 3: fixing format)
Line 48: Line 48:
These are the average log folds with significance p<0.05.
These are the average log folds with significance p<0.05.
-
T15
+
*T15
-
Greater than zero: 437
+
**Greater than zero: 437
-
Less than zero: 771
+
**Less than zero: 771
-
Greater than .25: 402
+
**Greater than .25: 402
-
Less than -.25: 256
+
**Less than -.25: 256
-
T30
+
*T30
-
Greater than zero: 713
+
**Greater than zero: 713
-
Less than zero:  826
+
**Less than zero:  826
-
Greater than .25:  673
+
**Greater than .25:  673
-
Less than -.25: 770
+
**Less than -.25: 770
-
T60
+
*T60
-
Greater than zero:  760
+
**Greater than zero:  760
-
Less than zero:  799
+
**Less than zero:  799
-
Greater than .25: 727
+
**Greater than .25: 727
-
Less than -.25 :  745
+
**Less than -.25 :  745
-
T90
+
*T90
-
Greater than zero: 319
+
**Greater than zero: 319
-
Less than zero: 219
+
**Less than zero: 219
-
Greater than .25:  277
+
**Greater than .25:  277
-
Less than -.25: 194
+
**Less than -.25: 194
T120
T120

Revision as of 11:36, 9 April 2013

Contents

Week 9 Journal

Part One

These are the number of genes that fall into each significance level for each time period.

  • T15
    • P<0.05 - 781
    • P<0.01 - 218
    • P< 0.001 - 21
    • P<0.0001 - 1
  • T30
    • P<0.05 - 1539
    • P<0.01 - 456
    • P< 0.001 - 55
    • P<0.0001 - 2
  • T60
    • P<0.05 - 1559
    • P<0.01 - 384
    • P< 0.001 - 51
    • P<0.0001 - 6
  • T90
    • P<0.05 - 538
    • P<0.01 - 129
    • P< 0.001 - 9
    • P<0.0001 - 1
  • T120
    • P<0.05 - 564
    • P<0.01 - 114
    • P< 0.001 - 16
    • P<0.0001 - 5

Part Two

These are the number of genes that fall under a p<0.05 significance threshold with the Bonferroni correction.

  • T15: 1 value
  • T30: 0
  • T60: 2
  • T90: 1
  • T120: 0

Part 3

These are the average log folds with significance p<0.05.

  • T15
    • Greater than zero: 437
    • Less than zero: 771
    • Greater than .25: 402
    • Less than -.25: 256
  • T30
    • Greater than zero: 713
    • Less than zero: 826
    • Greater than .25: 673
    • Less than -.25: 770
  • T60
    • Greater than zero: 760
    • Less than zero: 799
    • Greater than .25: 727
    • Less than -.25 : 745
  • T90
    • Greater than zero: 319
    • Less than zero: 219
    • Greater than .25: 277
    • Less than -.25: 194

T120 Greater than zero: 332 Less than zero: 232 Greater than .25: 245 Less than -.25: 170

Part 4

This is the data for the gene NSR1.

Average at time 15: 1.2 P value: 0.0046

Average at time 30: 1.98 P value: 0.0180

Average at time 60: 1.96 P value: 0.0151

Average at time 90: -0.75 P value: 0.0676

Average at time 120: -0.63 P value: 0.1601 There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05.

Part 5

The gene with the smallest p value is YPR059C with p=4.73816675697583E-06. Unfortunately in the database little to nothing is known about this gene. The only information available was that it most likely does not code for a protein.



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