Arking:JCAOligoTutorialHome: Difference between revisions
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Synthetic Biology Tutorial<br> | |||
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<div class="tabs-blue"> | |||
<ul> | |||
<li>[[User:JCAnderson| Home]]</li> | |||
<li>[[Arking:BerkelyiGEm | Teaching]]</li> | |||
<li >[[Arking:JCAProtocols|Protocols]]</li> | |||
<li id="current">[[Arking:JCAOligoTutorialHome | Tutorials]]</li> | |||
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==Lectures== | |||
If you'd like a more advanced series of topics, you might check out my video lectures: | |||
http://www.youtube.com/channel/UCSVDJJWZ77tOzwl4L9nyg2w/videos?view=1&sort=da&flow=list | |||
==The Basics== | |||
'''Think the "Central Dogma" involves a kennel of chihuahuas? You need to start here with the basics.''' | |||
<span style='font-size:18.0pt'> | |||
[[Media:Bare_Bones_Biochemistry.pdf]] | |||
</span> | |||
<br> | |||
<br> | |||
<span style='font-size:18.0pt'> | |||
[http://andersonlab.qb3.berkeley.edu/Tutorials/Basic_Molecular_Biology.pdf Basic Molecular Biology] | |||
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<br> | |||
<span style='font-size:18.0pt'> | |||
[[JCAOligoTutorialDNA | Practical DNA]] | |||
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<span style='font-size:18.0pt'> | |||
[[JCAOligoTutorialPCR| What is PCR?]] | |||
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<br> | |||
<br> | |||
==Introduction to Biobricks and Basic Cloning== | ==Introduction to Biobricks and Basic Cloning== | ||
'''This tutorial is best used in conjunction with the sequence editor ApE | '''This tutorial is best used in conjunction with the sequence editor ApE. Read the section about ApE for a description of how to install it.''' | ||
<span style='font-size:18.0pt'> | |||
[[Arking:JCATutorialIntro9 | Installing ApE]] | |||
</span> | |||
<br> | |||
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<span style='font-size:18.0pt'> | <span style='font-size:18.0pt'> | ||
[[Arking:JCATutorialIntro7 | Overview of Cloning]] | [[Arking:JCATutorialIntro7 | Overview of Cloning]] | ||
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== | ==Technical Design== | ||
<span style='font-size:18.0pt'> | <span style='font-size:18.0pt'> | ||
[[Arking: | [[Arking:JCAOligoTutorial1b | Basic Oligo Design]] | ||
[[Arking:JCAOligoTutorial1 | (old)]] | |||
</span> | </span> | ||
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<span style='font-size:18.0pt'> | <span style='font-size:18.0pt'> | ||
[[Arking: | [[Arking:JCAOligoTutorial2b | Special Case: Single Internal Restriction Sites]] | ||
[[Arking:JCAOligoTutorial2 | (old)]] | |||
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<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutoria21 | Construction of short parts]] | |||
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[[Arking:JCAOligoTutorial5 | Design of composite parts]] | [[Arking:JCAOligoTutorial5 | Design of composite parts]] | ||
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<br> | |||
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<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutorial9 | Keeping track of construction files]] | |||
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== | |||
==Advanced Technical Design== | |||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutoria20 | Working with Translational Fusions]] | |||
</span> | |||
<br> | |||
<br> | |||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutoria22 | Circularly Permuted Proteins]] | |||
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<br> | |||
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<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutoria23 | The "what did they make" game]] | |||
</span> | |||
<br> | |||
<br> | |||
==Implementation== | |||
<span style='font-size:18.0pt'> | <span style='font-size:18.0pt'> | ||
[[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]] | [[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]] | ||
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<br> | <br> | ||
<br> | <br> | ||
==Introduction to Structural Biology and Part Engineering== | |||
<span style='font-size:18.0pt'> | <span style='font-size:18.0pt'> | ||
[[Arking: | [[Arking:JCAOligoTutoria24 | DeepView Basics]] | ||
</span> | </span> | ||
<br> | <br> | ||
<br> | <br> | ||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutoria25 | Tour of Structural Biology]] | |||
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<br> | |||
<br> | |||
==Things you should know== | |||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutorial7 | Common Pitfalls and Tips]] | |||
</span> | |||
<br> | |||
<br> | |||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutorial8 | Origins of replication]] | |||
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<br> | |||
<br> | |||
<span style='font-size:18.0pt'> | |||
[[Arking:JCAOligoTutorial19 | The Critical Path]] | |||
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<br> | |||
---- | |||
[[Retired Sections]]<br> | |||
[[Arking:JCAOligoTutorialToBeAdded | To Be Added]] | |||
{{Template:JCA_Arkin_tutorialfooter}}<br> | |||
[[Arking:JCAOligoTutoria26 | . ]] | |||
[[Arking:JCAOligoTutoria27 | . ]] | |||
[[Arking:JCAOligoTutoria28 | . ]] |
Revision as of 21:32, 26 January 2014
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Synthetic Biology Tutorial |
---|
Lectures
If you'd like a more advanced series of topics, you might check out my video lectures: http://www.youtube.com/channel/UCSVDJJWZ77tOzwl4L9nyg2w/videos?view=1&sort=da&flow=list
The Basics
Think the "Central Dogma" involves a kennel of chihuahuas? You need to start here with the basics.
Media:Bare_Bones_Biochemistry.pdf
Basic Molecular Biology
Practical DNA
What is PCR?
Introduction to Biobricks and Basic Cloning
This tutorial is best used in conjunction with the sequence editor ApE. Read the section about ApE for a description of how to install it.
Installing ApE
Overview of Cloning
Introduction to Biobricks
Introduction to Refactoring
Technical Design
Basic Oligo Design
(old)
Special Case: Single Internal Restriction Sites
(old)
Construction of short parts
Design of composite parts
Keeping track of construction files
Sequencing Analysis
Advanced Technical Design
Working with Translational Fusions
Circularly Permuted Proteins
The "what did they make" game
Implementation
Implementing the Basic Construction File
Introduction to Structural Biology and Part Engineering
DeepView Basics
Tour of Structural Biology
Things you should know
Common Pitfalls and Tips
Origins of replication
The Critical Path
If you have any comments or want to report a potential error in the tutorial, please email me (Chris Anderson) at JCAnderson2167-at-gmail.com