Arking:JCAOligoTutorialHome

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Technical Design)
(19 intermediate revisions not shown.)
Line 1: Line 1:
__NOTOC__
__NOTOC__
 +
<html><head>
 +
<script type="text/javascript">
 +
 +
  var _gaq = _gaq || [];
 +
  _gaq.push(['_setAccount', 'UA-19472149-5']);
 +
  _gaq.push(['_trackPageview']);
 +
 +
  (function() {
 +
    var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
 +
    ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
 +
    var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
 +
  })();
 +
 +
</script>
 +
</head></html>
 +
{| class="wikitable" border="0" cellpadding="5" cellspacing="1" style="text-align:center"
{| class="wikitable" border="0" cellpadding="5" cellspacing="1" style="text-align:center"
!width="25%" align="left" valign="top" style="background:#2171B8; color:white"|
!width="25%" align="left" valign="top" style="background:#2171B8; color:white"|
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
Basic Cloning and Biobrick Assembly Tutorial<br>
+
Synthetic Biology Tutorial<br>
</span>
</span>
|-
|-
Line 67: Line 83:
==Technical Design==
==Technical Design==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutorial1 | Basic Oligo Design]]
+
[[Arking:JCAOligoTutorial1b | Basic Oligo Design]]
 +
[[Arking:JCAOligoTutorial1 | (old)]]
</span>
</span>
<br>
<br>
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutorial2 | Special Case: Single Internal Restriction Sites]]
+
[[Arking:JCAOligoTutorial2b | Special Case: Single Internal Restriction Sites]]
 +
[[Arking:JCAOligoTutorial2 | (old)]]
</span>
</span>
<br>
<br>
Line 82: Line 100:
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutoria20 | Working with Translational Fusions]]
+
[[Arking:JCAOligoTutorial5 | Design of composite parts]]
</span>
</span>
<br>
<br>
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutorial5 | Design of composite parts]]
+
[[Arking:JCAOligoTutorial9 | Keeping track of construction files]]
</span>
</span>
<br>
<br>
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutorial9 | Keeping track of construction files]]
+
[[Arking:JCAOligoTutorial6 | Sequencing Analysis]]
</span>
</span>
<br>
<br>
<br>
<br>
 +
 +
==Advanced Technical Design==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutorial6 | Sequencing Analysis]]
+
[[Arking:JCAOligoTutoria20 | Working with Translational Fusions]]
</span>
</span>
<br>
<br>
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
-
[[Arking:JCAOligoTutoria21 | Circular Permuted Proteins]]
+
[[Arking:JCAOligoTutoria22 | Circularly Permuted Proteins]]
 +
</span>
 +
<br>
 +
<br>
 +
<span style='font-size:18.0pt'>
 +
[[Arking:JCAOligoTutoria23 | The "what did they make" game]]
</span>
</span>
<br>
<br>
Line 110: Line 135:
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
[[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]]
[[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]]
 +
</span>
 +
<br>
 +
<br>
 +
 +
==Introduction to Structural Biology and Part Engineering==
 +
<span style='font-size:18.0pt'>
 +
[[Arking:JCAOligoTutoria24 | DeepView Basics]]
 +
</span>
 +
<br>
 +
<br>
 +
<span style='font-size:18.0pt'>
 +
[[Arking:JCAOligoTutoria25 | Tour of Structural Biology]]
</span>
</span>
<br>
<br>
Line 129: Line 166:
</span>
</span>
<br>
<br>
 +
<br>
 +
 +
----
----
[[Retired Sections]]<br>
[[Retired Sections]]<br>
[[Arking:JCAOligoTutorialToBeAdded | To Be Added]]
[[Arking:JCAOligoTutorialToBeAdded | To Be Added]]
{{Template:JCA_Arkin_tutorialfooter}}<br>
{{Template:JCA_Arkin_tutorialfooter}}<br>
 +
 +
[[Arking:JCAOligoTutoria26 | . ]]
 +
[[Arking:JCAOligoTutoria27 | . ]]
 +
[[Arking:JCAOligoTutoria28 | . ]]

Revision as of 01:21, 19 September 2011

Synthetic Biology Tutorial



The Basics

Think the "Central Dogma" involves a kennel of chihuahuas? You need to start here with the basics.

Bare bones biochemistry

Basic Molecular Biology

Practical DNA

What is PCR?

Introduction to Biobricks and Basic Cloning

This tutorial is best used in conjunction with the sequence editor ApE. Read the section about ApE for a description of how to install it.

Installing ApE

Overview of Cloning

Introduction to Biobricks

Introduction to Refactoring

Technical Design

Basic Oligo Design (old)

Special Case: Single Internal Restriction Sites (old)

Construction of short parts

Design of composite parts

Keeping track of construction files

Sequencing Analysis

Advanced Technical Design

Working with Translational Fusions

Circularly Permuted Proteins

The "what did they make" game

Implementation

Implementing the Basic Construction File

Introduction to Structural Biology and Part Engineering

DeepView Basics

Tour of Structural Biology

Things you should know

Common Pitfalls and Tips

Origins of replication

The Critical Path



Retired Sections
To Be Added


If you have any comments or want to report a potential error in the tutorial, please email me (Chris Anderson) at JCAnderson2167-at-gmail.com

. . .

Personal tools