Arking:JCAOligoTutorialHome

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{| class="wikitable" border="0" cellpadding="5" cellspacing="1" style="text-align:center"
{| class="wikitable" border="0" cellpadding="5" cellspacing="1" style="text-align:center"
!width="25%" align="left" valign="top" style="background:#2171B8; color:white"|
!width="25%" align="left" valign="top" style="background:#2171B8; color:white"|
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
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Basic Cloning and Biobrick Assembly Tutorial<br>
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Synthetic Biology Tutorial<br>
</span>
</span>
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|-
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<ul>
<ul>
<li>[[User:JCAnderson| Home]]</li>
<li>[[User:JCAnderson| Home]]</li>
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<li>[[Arking:BerkelyiGEm | iGEM]]</li>
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<li>[[Arking:BerkelyiGEm | Teaching]]</li>
<li >[[Arking:JCAProtocols|Protocols]]</li>
<li >[[Arking:JCAProtocols|Protocols]]</li>
<li id="current">[[Arking:JCAOligoTutorialHome | Tutorials]]</li>
<li id="current">[[Arking:JCAOligoTutorialHome | Tutorials]]</li>
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<br>
<br>
<br>
<br>
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==The Basics==
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'''Think the "Central Dogma" involves a kennel of chihuahuas?  You need to start here with the basics.'''
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<span style='font-size:18.0pt'>
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[http://andersonlab.qb3.berkeley.edu/Tutorials/Bare_Bones_Biochemistry.htm Bare bones biochemistry]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[http://andersonlab.qb3.berkeley.edu/Tutorials/Basic_Molecular_Biology.htm Basic Molecular Biology]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[[JCAOligoTutorialDNA | Practical DNA]]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[[JCAOligoTutorialPCR| What is PCR?]]
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</span>
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<br>
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<br>
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==Introduction to Biobricks and Basic Cloning==
==Introduction to Biobricks and Basic Cloning==
'''This tutorial is best used in conjunction with the sequence editor ApE.  Read the section about ApE for a description of how to install it.'''
'''This tutorial is best used in conjunction with the sequence editor ApE.  Read the section about ApE for a description of how to install it.'''
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<br>
<br>
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==Experimental Design==
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==Technical Design==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutorial1 | Basic Oligo Design]]
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[[Arking:JCAOligoTutorial1b | Basic Oligo Design]]
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[[Arking:JCAOligoTutorial1 | (old)]]
</span>
</span>
<br>
<br>
<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutorial2 | Special Case: Single Internal Restriction Sites]]
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[[Arking:JCAOligoTutorial2b | Special Case: Single Internal Restriction Sites]]
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[[Arking:JCAOligoTutorial2 | (old)]]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutoria21 | Construction of short parts]]
</span>
</span>
<br>
<br>
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<br>
<br>
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==Experimental Implementation==
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==Advanced Technical Design==
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<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutoria20 | Working with Translational Fusions]]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutoria22 | Circularly Permuted Proteins]]
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</span>
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<br>
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<br>
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<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutoria23 | The "what did they make" game]]
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</span>
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<br>
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<br>
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==Implementation==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
[[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]]
[[Arking:JCAOligoTutorial3 | Implementing the Basic Construction File]]
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<br>
<br>
<br>
<br>
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==Introduction to Structural Biology and Part Engineering==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutorial4 | DBBS Composite Part Assembly]]
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[[Arking:JCAOligoTutoria24 | DeepView Basics]]
</span>
</span>
<br>
<br>
<br>
<br>
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<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutoria25 | Tour of Structural Biology]]
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</span>
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<br>
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<br>
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==Things you should know==
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
[[Arking:JCAOligoTutorial7 | Common Pitfalls and Tips]]
[[Arking:JCAOligoTutorial7 | Common Pitfalls and Tips]]
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<br>
<br>
<span style='font-size:18.0pt'>
<span style='font-size:18.0pt'>
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[[Arking:JCAOligoTutorialToBeAdded | To Be Added]]
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[[Arking:JCAOligoTutorial19 | The Critical Path]]
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</span><br>
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</span>
<br>
<br>
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{{Template:JCA_Arkin_tutorialfooter}}
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<br>
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----
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[[Retired Sections]]<br>
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[[Arking:JCAOligoTutorialToBeAdded | To Be Added]]
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{{Template:JCA_Arkin_tutorialfooter}}<br>
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[[Arking:JCAOligoTutoria26 | . ]]
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[[Arking:JCAOligoTutoria27 | . ]]
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[[Arking:JCAOligoTutoria28 | . ]]

Revision as of 01:21, 19 September 2011

Synthetic Biology Tutorial



The Basics

Think the "Central Dogma" involves a kennel of chihuahuas? You need to start here with the basics.

Bare bones biochemistry

Basic Molecular Biology

Practical DNA

What is PCR?

Introduction to Biobricks and Basic Cloning

This tutorial is best used in conjunction with the sequence editor ApE. Read the section about ApE for a description of how to install it.

Installing ApE

Overview of Cloning

Introduction to Biobricks

Introduction to Refactoring

Technical Design

Basic Oligo Design (old)

Special Case: Single Internal Restriction Sites (old)

Construction of short parts

Design of composite parts

Keeping track of construction files

Sequencing Analysis

Advanced Technical Design

Working with Translational Fusions

Circularly Permuted Proteins

The "what did they make" game

Implementation

Implementing the Basic Construction File

Introduction to Structural Biology and Part Engineering

DeepView Basics

Tour of Structural Biology

Things you should know

Common Pitfalls and Tips

Origins of replication

The Critical Path



Retired Sections
To Be Added


If you have any comments or want to report a potential error in the tutorial, please email me (Chris Anderson) at JCAnderson2167-at-gmail.com

. . .

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