(Difference between revisions)
 Revision as of 23:40, 2 April 2013 (view source) (Starting the assignment)← Previous diff Revision as of 00:12, 3 April 2013 (view source) (→Week 9 Assignment)Next diff → Line 2: Line 2: ==Week 9 Assignment== ==Week 9 Assignment== - #*How many genes have p value < 0.05? + #P-Values less than .05 - *t=15 - 803 + #* t=15 – 803 - *t=30 - 1213 + #* t=30 – 1213 - *t=60 - 1042 + #* t=60 – 1042 - *t=90 - 672 + #* t=90 – 672 - *t=120 - 288 + #* t=120 – 288 + + #P-Values less than .01 + #* t=15 – 203 + #* t=30 – 415 + #* t=60 – 273 + #* t=90 – 162 + #* t=120 – 36 + + #P-Values less than .001 + #* t=15 – 24 + #* t=30 – 69 + #* t=60 – 33 + #* t=90 – 14 + #* t=120 – 5 + + #P-Values less than .0001 + #* t=15 – 2 + #* t=30 – 8 + #* t=60 – 4 + #* t=90 – 0 + #* t=120 – 2 + + =Bonferroni correction (<.05)= + #t=15 – 0 + #t=30 – 1 + #t=60 – 0 + #t=90 – 0 + #t=120 – 0 + + =AvgLogFC (Time = 30)= + #p<.05 and positive – 681 + #p<.05 and negative – 532 + #p<.05 and FC >.25 – 668 + #p<.05 and FC <-.25 – 517 + + =NSR1 Expression= + #t=15 + #*P=.0042 + #*FC=1.568 + #t=30 + #*P=.0019 + #*FC=2.058 + #t=60 + #*P=.0462 + #*FC=1.665 + #t=90 + #*P=.1821 + #*FC=-.656 + #t=120 + #*P=.506 + #*FC=-.1399 + + =Lowest P-Value= + *YOR342C- Protein of unknown function + {{Salman Ahmad}} {{Salman Ahmad}}

## Week 9 Assignment

1. P-Values less than .05
• t=15 – 803
• t=30 – 1213
• t=60 – 1042
• t=90 – 672
• t=120 – 288
1. P-Values less than .01
• t=15 – 203
• t=30 – 415
• t=60 – 273
• t=90 – 162
• t=120 – 36
1. P-Values less than .001
• t=15 – 24
• t=30 – 69
• t=60 – 33
• t=90 – 14
• t=120 – 5
1. P-Values less than .0001
• t=15 – 2
• t=30 – 8
• t=60 – 4
• t=90 – 0
• t=120 – 2

1. t=15 – 0
2. t=30 – 1
3. t=60 – 0
4. t=90 – 0
5. t=120 – 0

# AvgLogFC (Time = 30)

1. p<.05 and positive – 681
2. p<.05 and negative – 532
3. p<.05 and FC >.25 – 668
4. p<.05 and FC <-.25 – 517

1. t=15
• P=.0042
• FC=1.568
2. t=30
• P=.0019
• FC=2.058
3. t=60
• P=.0462
• FC=1.665
4. t=90
• P=.1821
• FC=-.656
5. t=120
• P=.506
• FC=-.1399

# Lowest P-Value

• YOR342C- Protein of unknown function