AhmadWeek9

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(Week 9 Assignment)
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==Week 9 Assignment==
==Week 9 Assignment==
-
#*How many genes have p value < 0.05?
+
#P-Values less than .05
-
*t=15 - 803
+
#* t=15 803
-
*t=30 - 1213
+
#* t=30 1213
-
*t=60 - 1042
+
#* t=60 1042
-
*t=90 - 672
+
#* t=90 672
-
*t=120 - 288
+
#* t=120 288
 +
 
 +
#P-Values less than .01
 +
#* t=15 – 203
 +
#* t=30 – 415
 +
#* t=60 – 273
 +
#* t=90 – 162
 +
#* t=120 – 36
 +
 
 +
#P-Values less than .001
 +
#* t=15 – 24
 +
#* t=30 – 69
 +
#* t=60 – 33
 +
#* t=90 – 14
 +
#* t=120 – 5
 +
 
 +
#P-Values less than .0001
 +
#* t=15 – 2
 +
#* t=30 – 8
 +
#* t=60 – 4
 +
#* t=90 – 0
 +
#* t=120 – 2
 +
 
 +
=Bonferroni correction (<.05)=
 +
#t=15 – 0
 +
#t=30 – 1
 +
#t=60 – 0
 +
#t=90 – 0
 +
#t=120 – 0
 +
 
 +
=AvgLogFC (Time = 30)=
 +
#p<.05 and positive – 681
 +
#p<.05 and negative – 532
 +
#p<.05 and FC >.25 – 668
 +
#p<.05 and FC <-.25 – 517
 +
 
 +
=NSR1 Expression=
 +
#t=15
 +
#*P=.0042
 +
#*FC=1.568
 +
#t=30
 +
#*P=.0019
 +
#*FC=2.058
 +
#t=60
 +
#*P=.0462
 +
#*FC=1.665
 +
#t=90
 +
#*P=.1821
 +
#*FC=-.656
 +
#t=120
 +
#*P=.506
 +
#*FC=-.1399
 +
 
 +
=Lowest P-Value=
 +
*YOR342C- Protein of unknown function
 +
 
{{Salman Ahmad}}
{{Salman Ahmad}}

Revision as of 23:12, 2 April 2013

Contents

Week 9 Assignment

  1. P-Values less than .05
    • t=15 – 803
    • t=30 – 1213
    • t=60 – 1042
    • t=90 – 672
    • t=120 – 288
  1. P-Values less than .01
    • t=15 – 203
    • t=30 – 415
    • t=60 – 273
    • t=90 – 162
    • t=120 – 36
  1. P-Values less than .001
    • t=15 – 24
    • t=30 – 69
    • t=60 – 33
    • t=90 – 14
    • t=120 – 5
  1. P-Values less than .0001
    • t=15 – 2
    • t=30 – 8
    • t=60 – 4
    • t=90 – 0
    • t=120 – 2

Bonferroni correction (<.05)

  1. t=15 – 0
  2. t=30 – 1
  3. t=60 – 0
  4. t=90 – 0
  5. t=120 – 0

AvgLogFC (Time = 30)

  1. p<.05 and positive – 681
  2. p<.05 and negative – 532
  3. p<.05 and FC >.25 – 668
  4. p<.05 and FC <-.25 – 517

NSR1 Expression

  1. t=15
    • P=.0042
    • FC=1.568
  2. t=30
    • P=.0019
    • FC=2.058
  3. t=60
    • P=.0462
    • FC=1.665
  4. t=90
    • P=.1821
    • FC=-.656
  5. t=120
    • P=.506
    • FC=-.1399

Lowest P-Value

  • YOR342C- Protein of unknown function


Assignments

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