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| [[Image:Pano1.jpg|750px]] | | My name is [http://www3.abhishek-tiwari.com/ Abhishek Tiwari] and I am PhD student in Bioengineering at [http://www.abi.auckland.ac.nz/uoa/ Auckland Bioengineering Institute], the [http://www.auckland.ac.nz/ University of Auckland]. I am condcuting my doctoral research on modelling of hormone dynamics. This wiki is the new home of my PhD research activities and it will provide models, results, experiments, or any other insights related to the project. I also maintain the [http://www.abhishek-tiwari.com/ Fisheye Perspective] blog which aggregates my random thoughts and speculations about science, systems biology, synthetic biology and technology. |
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| [[Abhishek Tiwari | <font face="trebuchet ms" style="color:#ffffff"> '''Home''' </font>]]
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| [[Abhishek Tiwari:Contact | <font face="trebuchet ms" style="color:#ffffff"> '''Contact''' </font>]] | |
| [[Abhishek Tiwari:iCODONS | <font face="trebuchet ms" style="color:#ffffff"> '''iCODONS''' </font>]]
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| [[Abhishek Tiwari:Reprints | <font face="trebuchet ms" style="color:#ffffff"> '''Publications''' </font>]]
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| [[Abhishek Tiwari:Research | <font face="trebuchet ms" style="color:#ffffff"> '''Research''' </font>]] | |
| [[Abhishek Tiwari:Projects | <font face="trebuchet ms" style="color:#ffffff"> '''Projects''' </font>]]
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| [[Abhishek Tiwari:Softwares | <font face="trebuchet ms" style="color:#ffffff"> '''Softwares''' </font>]]
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| [[Abhishek Tiwari:Links | <font face="trebuchet ms" style="color:#ffffff"> '''Links''' </font>]]
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| | ==Project content== |
| | *Table of content-[[Modelling Hormone Dynamics]] |
| | *Publications-[[Manuscripts Modelling Hormone Dynamics]] |
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| | ==Quick Links== |
| | | *[[Curated HPA-Axis Models]] |
| =Welcome to webpage of Abhishek Tiwari= | | *[[Modelling ACTH-induced steroidogenesis]] |
| | | *[[Multicellular simulation using CellML]] |
| The current focus of my research is the application of computational methods and tools to solve biological problems of fundamental significance. More details can be found in [[Abhishek Tiwari:Research|Research]] section. Currently I am working as Research Associate with Informatics Group at GVK Biosciences. I am also a member of Prof Gautam R. Desiraju Research Group at School of Chemistry at University of Hyderabad.
| | *[[Hormone Dynamics of HAC15/Y1 Cells]] |
| | | *[http://openwetware.org/wiki/OpenWetWare:Information_management/PubgetNotes Referring DOI and PMID] |
| =Technichal Stuff=
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| ==Workflow technology, Cheminformatics ,Bioinformatics and Drug Discovery==
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| [[Image:Data_Pipelining.jpg]] | |
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| Workflow technology is a mechanism to integrate data, application and services. Workflow technology enables scientist to dynamically construct their own research protocol for scientific analytics and decision making by connecting various resources and software applications together in an innovative way. Workflow technology is being increasingly applied in discovery informatics to organize and analyze data. SciTegic's Pipeline Pilot is a one of the chemically intelligent implementation of a workflow technology known as data pipelining. It allows scientists to construct and execute workflows using components that encapsulate many cheminformatics based algorithms.
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| Workflow technology is generic so analytics work flow can be built for any areas like gene expression analysis, sequence analysis, proteomics, system biology and so on. Workflow technology provides an interface where software from different vendors can assemble according to scientific requirement.
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| [[Abhishek Tiwari:Workflow technology|Read More]] | |
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| == Chemical Informatics or Cheminformatics Toolkits==
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| "Any idiot can stand up and say that virtual screening doesn't work. It takes real brains to show how to improve it!" - Mark McGann
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| Currently a lot of toolkits (Daylight Toolkit, Chemaxon Toolkit, OpenEye Toolkit, MOE SVL, Accord, CDK, JOELib etc) are available from different vendors and organization. Most of them are equally good but choice may vary based on user prospective. I will try to give a summarized overview of some commonly used Chemical Informatics Toolkits. For academics user Chemaxon JChem (which is free for academic user) and Open Source Toolkits like CDK and JOELib will be a better choice. If your budget permits then you can use Daylight, Accord , OpenEye, MOE SVL or any other depending on your needs but Chemaxon and MOE are low budget high quality options.
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| [[Abhishek Tiwari:Chemical Informatics Toolkits|Read More]]
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| ==Bioinformatics Toolkits ==
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| = In News =
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| = Latest Sections =
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| * [[Abhishek Tiwari:BioCreAtIvE II|BioCreAtIvE II]] | |
| * [[Abhishek Tiwari:Hot Computational Biology Papers-By Category|Hot Computational Biology Papers-By Category]] | |
| * [[Abhishek Tiwari:Links|Hot Computational Biology Links-By Category]] | |
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