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| [[Image:Pano1.jpg|750px]] | | My name is [http://www3.abhishek-tiwari.com/ Abhishek Tiwari] and I am PhD student in Bioengineering at [http://www.abi.auckland.ac.nz/uoa/ Auckland Bioengineering Institute], the [http://www.auckland.ac.nz/ University of Auckland]. I am condcuting my doctoral research on modelling of hormone dynamics. This wiki is the new home of my PhD research activities and it will provide models, results, experiments, or any other insights related to the project. I also maintain the [http://www.abhishek-tiwari.com/ Fisheye Perspective] blog which aggregates my random thoughts and speculations about science, systems biology, synthetic biology and technology. |
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| [[Abhishek Tiwari | <font face="trebuchet ms" style="color:#ffffff"> '''Home''' </font>]]
| | ==Project content== |
| [[Abhishek Tiwari:Contact | <font face="trebuchet ms" style="color:#ffffff"> '''Contact''' </font>]]
| | *Table of content-[[Modelling Hormone Dynamics]] |
| [[Abhishek Tiwari:iCODONS | <font face="trebuchet ms" style="color:#ffffff"> '''iCODONS''' </font>]] | | *Publications-[[Manuscripts Modelling Hormone Dynamics]] |
| [[Abhishek Tiwari:Reprints | <font face="trebuchet ms" style="color:#ffffff"> '''Publications''' </font>]]
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| [[Abhishek Tiwari:Research | <font face="trebuchet ms" style="color:#ffffff"> '''Research''' </font>]]
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| [[Abhishek Tiwari:Projects | <font face="trebuchet ms" style="color:#ffffff"> '''Projects''' </font>]]
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| [[Abhishek Tiwari:Softwares | <font face="trebuchet ms" style="color:#ffffff"> '''Softwares''' </font>]] | |
| [[Abhishek Tiwari:Links | <font face="trebuchet ms" style="color:#ffffff"> '''Links''' </font>]]
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| | | ==Quick Links== |
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| | *[[Curated HPA-Axis Models]] |
| | | *[[Modelling ACTH-induced steroidogenesis]] |
| '''Welcome to webpage of Abhishek Tiwari
| | *[[Multicellular simulation using CellML]] |
| | | *[[Hormone Dynamics of HAC15/Y1 Cells]] |
| The current focus of my research is the application of computational methods and tools to solve biological problems of fundamental significance. More details can be found in [[Abhishek Tiwari:Research|Research]] section. Recently I completed my BS Bioinformatics from VIT, Vellore, India and currently working as Jr. Research Associate with Informatics Group at GVK Biosciences.
| | *[http://openwetware.org/wiki/OpenWetWare:Information_management/PubgetNotes Referring DOI and PMID] |
| I am also a member of Prof Gautam R. Desiraju Research Group at School of Chemistry at University
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| of Hyderabad. My research network is known as [[Abhishek Tiwari:iCODONS|iCODONS]].
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| ==Latest Articles by Abhishek Tiwari==
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| * [[Abhishek Tiwari:Biological Text Mining|Biological Text Mining]] | |
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| ==Hot Computational Papers==
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| *'''An Integrative Method for Accurate Comparative Genome Mapping''' | |
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| '''Synopsis'''
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| Comparative genomics is an important discipline with applications in evolutionary, genetic, and genome rearrangement studies. When comparing genomes, one is usually interested in investigating the relation between the genomic segments to establish their evolutionary origin: are the segments orthologous, and hence inherited from their most recent common ancestor? Are they paralogs, and hence duplicated from an ancestral segment? Did the segments undergo reordering? Were the segments deleted or inserted and—if so—how (insertion sequence, prophage, horizontal gene transfer)?
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| In this paper, Swidan et al. present MAGIC, a new approach for comparative genome mapping. The main novelty of this approach is the biologically intuitive clustering step, which aims towards both calculating reorder-free segments and identifying orthologous segments. The authors demonstrate MAGIC's robustness, relative to both its initial input and to its parameters' values. MAGIC's scalability is demonstrated by running it on distantly related organisms and on large genomes. In addition, Swidan et al. provide a detailed analysis of the differences between MAGIC and other comparative mapping methods.
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| Applying MAGIC to several prokaryotic pairs enabled the authors to address the aforementioned questions and to quantitatively study the different evolutionary forces shaping the prokaryotic genome as well as to investigate their breakpoint distribution.
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| <ul><li> <a href="" title="Knight"> Home</a>
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| </li><li> <a href="Abhishek_Tiwari" title="Knight:Lab Members"> People</a>
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| </li><li> <a href="Contact.html" title="Knight:Contact"> Contact</a>
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| </li><li> <a href="Projects.html" title="Knight:Projects"> Projects</a>
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| </li><li> <strong class="selflink"> Publications</strong>
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| </li><li> <a href="Equipment.html" title="Knight:Equipment"> Equipment</a>
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| </li><li> <a href="Safety.html" title="Knight:Safety"> Safety</a>
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| </li><li> <a href="Protocols.html" title="Knight:Protocols"> Protocols</a>
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| </li><li> <a href="/wiki/Main_Page" title="Main Page"> OpenWetWare</a>
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